Magnesium in PDB 8x7u: Mcm in Complex with Dsdna in Presence of Atp.

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mcm in Complex with Dsdna in Presence of Atp. (pdb code 8x7u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Mcm in Complex with Dsdna in Presence of Atp., PDB code: 8x7u:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 8x7u

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Magnesium binding site 1 out of 3 in the Mcm in Complex with Dsdna in Presence of Atp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mcm in Complex with Dsdna in Presence of Atp. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg701

b:56.6
occ:1.00
OG D:SER336 2.2 50.1 1.0
O3B D:ATP702 2.8 66.7 1.0
O1G D:ATP702 2.8 58.6 1.0
CB D:SER336 3.3 50.1 1.0
PG D:ATP702 3.4 51.2 1.0
O2A D:ATP702 4.0 72.3 1.0
PB D:ATP702 4.1 61.4 1.0
O3A D:ATP702 4.2 66.4 1.0
O2G D:ATP702 4.4 59.0 1.0
O3G D:ATP702 4.4 60.8 1.0
NH2 E:ARG555 4.6 63.6 1.0
OD2 D:ASP393 4.6 40.8 1.0
CA D:SER336 4.6 50.1 1.0
PA D:ATP702 4.7 73.5 1.0
N D:SER336 4.8 50.1 1.0
NH2 D:ARG340 4.9 55.4 1.0
O2B D:ATP702 4.9 75.3 1.0

Magnesium binding site 2 out of 3 in 8x7u

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Magnesium binding site 2 out of 3 in the Mcm in Complex with Dsdna in Presence of Atp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Mcm in Complex with Dsdna in Presence of Atp. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg701

b:56.6
occ:1.00
OG C:SER336 2.5 39.6 1.0
CB C:SER336 3.1 39.6 1.0
O1G C:ATP702 3.1 58.6 1.0
O3B C:ATP702 3.6 66.7 1.0
PG C:ATP702 4.0 51.2 1.0
O2A C:ATP702 4.1 72.3 1.0
OD2 C:ASP393 4.4 41.5 1.0
OE1 D:GLU411 4.5 41.2 1.0
CA C:SER336 4.6 39.6 1.0
O3A C:ATP702 4.6 66.4 1.0
PB C:ATP702 4.8 61.4 1.0
PA C:ATP702 4.8 73.5 1.0
O3G C:ATP702 4.9 60.8 1.0

Magnesium binding site 3 out of 3 in 8x7u

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Magnesium binding site 3 out of 3 in the Mcm in Complex with Dsdna in Presence of Atp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Mcm in Complex with Dsdna in Presence of Atp. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg701

b:56.6
occ:1.00
O1B A:ATP702 2.1 75.3 1.0
OG A:SER336 2.7 126.8 1.0
PB A:ATP702 3.0 61.4 1.0
O2B A:ATP702 3.3 70.5 1.0
O3B A:ATP702 4.0 66.7 1.0
CB A:SER336 4.0 126.8 1.0
O3A A:ATP702 4.3 66.4 1.0
O1A A:ATP702 4.4 72.3 1.0
OE1 A:GLU394 4.6 141.9 1.0
O2A A:ATP702 4.6 54.1 1.0
PA A:ATP702 4.7 73.5 1.0

Reference:

J.Ma, G.Yi, M.Ye, C.Macgregor-Chatwin, Y.Sheng, Y.Lu, M.Li, R.J.C.Gilbert, P.Zhang. Mcm in Complex with Dsdna in Presence of Atp To Be Published.
Page generated: Sat Oct 5 01:00:16 2024

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