Magnesium in PDB 8xdm: F-Actin-Mad

The binding sites of Magnesium atom in the F-Actin-Mad (pdb code 8xdm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the F-Actin-Mad, PDB code: 8xdm:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the F-Actin-Mad


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F-Actin-Mad within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:27.0 occ:1.00 O2B A:ADP401 2.5 24.5 1.0 PB A:ADP401 3.8 24.5 1.0 O2A A:ADP401 3.8 24.5 1.0 OD1 A:ASP154 3.9 20.5 1.0 O3B A:ADP401 4.1 24.5 1.0 OD2 A:ASP11 4.1 25.0 1.0 OD2 A:ASP154 4.3 20.5 1.0 O3A A:ADP401 4.3 24.5 1.0 NZ A:LYS18 4.4 22.4 1.0 CG A:ASP154 4.6 20.5 1.0 PA A:ADP401 4.7 24.5 1.0 OD1 A:ASP11 4.8 25.0 1.0 CA A:GLY13 4.8 26.3 1.0 CG A:ASP11 4.9 25.0 1.0 NE2 A:GLN137 4.9 22.2 1.0 CD A:GLN137 4.9 22.2 1.0 CG2 A:VAL339 4.9 19.7 1.0 CA A:GLY156 4.9 22.0 1.0

Magnesium binding site 2 out of 3 in the F-Actin-Mad


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of F-Actin-Mad within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:27.2 occ:1.00 O2B B:ADP401 2.5 22.1 1.0 PB B:ADP401 3.8 22.1 1.0 O2A B:ADP401 3.8 22.1 1.0 OD1 B:ASP154 3.9 19.7 1.0 O3B B:ADP401 4.1 22.1 1.0 OD2 B:ASP11 4.1 21.2 1.0 OD2 B:ASP154 4.3 19.7 1.0 O3A B:ADP401 4.3 22.1 1.0 NZ B:LYS18 4.4 18.2 1.0 CG B:ASP154 4.6 19.7 1.0 PA B:ADP401 4.7 22.1 1.0 OD1 B:ASP11 4.8 21.2 1.0 CA B:GLY13 4.8 24.4 1.0 CG B:ASP11 4.9 21.2 1.0 NE2 B:GLN137 4.9 19.7 1.0 CD B:GLN137 4.9 19.7 1.0 CG2 B:VAL339 4.9 15.8 1.0 CA B:GLY156 4.9 21.0 1.0

Magnesium binding site 3 out of 3 in the F-Actin-Mad


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of F-Actin-Mad within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:26.9 occ:1.00 O2B C:ADP401 2.5 23.5 1.0 PB C:ADP401 3.8 23.5 1.0 O2A C:ADP401 3.8 23.5 1.0 OD1 C:ASP154 3.9 21.7 1.0 O3B C:ADP401 4.1 23.5 1.0 OD2 C:ASP11 4.1 24.7 1.0 OD2 C:ASP154 4.3 21.7 1.0 O3A C:ADP401 4.3 23.5 1.0 NZ C:LYS18 4.4 23.0 1.0 CG C:ASP154 4.6 21.7 1.0 PA C:ADP401 4.7 23.5 1.0 OD1 C:ASP11 4.8 24.7 1.0 CA C:GLY13 4.8 25.8 1.0 CG C:ASP11 4.9 24.7 1.0 NE2 C:GLN137 4.9 22.2 1.0 CD C:GLN137 4.9 22.2 1.0 CG2 C:VAL339 4.9 20.5 1.0 CA C:GLY156 4.9 21.4 1.0

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