Magnesium in PDB 8xj7: The Cryo-Em Structure of Mpxv E5 in Complex with Dna

The binding sites of Magnesium atom in the The Cryo-Em Structure of Mpxv E5 in Complex with Dna (pdb code 8xj7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the The Cryo-Em Structure of Mpxv E5 in Complex with Dna, PDB code: 8xj7:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the The Cryo-Em Structure of Mpxv E5 in Complex with Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Cryo-Em Structure of Mpxv E5 in Complex with Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:51.4 occ:1.00 OG A:SER510 2.1 57.9 1.0 O2B A:ANP801 2.6 45.3 1.0 O1G A:ANP801 2.7 51.7 1.0 CB A:SER510 3.1 45.6 1.0 PG A:ANP801 3.7 60.1 1.0 N3B A:ANP801 3.8 57.0 1.0 PB A:ANP801 3.8 39.4 1.0 OE2 A:GLU557 3.9 79.6 1.0 CA A:SER510 4.2 37.7 1.0 N A:SER510 4.2 41.2 1.0 NH2 B:ARG620 4.3 48.0 1.0 OD2 A:ASP603 4.3 66.8 1.0 O3G A:ANP801 4.3 60.5 1.0 O1A A:ANP801 4.5 54.6 1.0 OE2 B:GLU579 4.6 66.2 1.0 O1B A:ANP801 4.7 49.2 1.0 O3A A:ANP801 4.9 48.9 1.0

Magnesium binding site 2 out of 3 in the The Cryo-Em Structure of Mpxv E5 in Complex with Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Cryo-Em Structure of Mpxv E5 in Complex with Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:40.0 occ:1.00 OG B:SER510 2.1 39.7 1.0 O2B B:ANP801 2.5 28.1 1.0 O1G B:ANP801 2.6 37.3 1.0 CB B:SER510 3.2 27.9 1.0 OE2 B:GLU557 3.6 63.7 1.0 PG B:ANP801 3.8 51.3 1.0 PB B:ANP801 3.8 9.0 1.0 N3B B:ANP801 4.1 32.7 1.0 CA B:SER510 4.3 7.9 1.0 NH2 C:ARG620 4.3 36.4 1.0 N B:SER510 4.3 16.1 1.0 O3G B:ANP801 4.4 41.6 1.0 O1B B:ANP801 4.5 23.0 1.0 CD B:GLU557 4.6 67.1 1.0 O1A B:ANP801 4.6 42.0 1.0 NZ C:LYS575 4.8 48.4 1.0 OE1 B:GLU557 4.9 65.8 1.0 O3A B:ANP801 4.9 19.9 1.0

Magnesium binding site 3 out of 3 in the The Cryo-Em Structure of Mpxv E5 in Complex with Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Cryo-Em Structure of Mpxv E5 in Complex with Dna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg802 b:51.8 occ:1.00 OG C:SER510 2.0 41.6 1.0 O1G C:ANP801 2.5 36.8 1.0 O2B C:ANP801 2.8 25.4 1.0 CB C:SER510 3.2 24.9 1.0 N3B C:ANP801 3.5 33.0 1.0 PG C:ANP801 3.5 48.0 1.0 OE2 D:GLU579 3.7 63.7 1.0 PB C:ANP801 3.8 14.8 1.0 CA C:SER510 4.2 8.2 1.0 N C:SER510 4.3 20.0 1.0 O3G C:ANP801 4.3 45.0 1.0 OE1 C:GLU557 4.3 71.0 1.0 OE1 D:GLU579 4.3 61.7 1.0 O1A C:ANP801 4.4 32.8 1.0 CD D:GLU579 4.4 62.6 1.0 CD C:GLU557 4.6 74.2 1.0 O1B C:ANP801 4.7 22.8 1.0 OE2 C:GLU557 4.8 69.8 1.0 O2G C:ANP801 4.8 36.8 1.0 O3A C:ANP801 4.9 35.6 1.0 NH2 D:ARG620 4.9 49.8 1.0 OD2 C:ASP603 4.9 52.6 1.0

J.Gan, W.Zhang. Structural and Functional Insights Into the Helicase Protein E5 of Mpox Virus. Cell Discov 2024.
ISSN: ESSN 2056-5968