Magnesium in PDB 8xj8: The Cryo-Em Structure of Mpxv E5 C-Terminal in Complex with Dna

The binding sites of Magnesium atom in the The Cryo-Em Structure of Mpxv E5 C-Terminal in Complex with Dna (pdb code 8xj8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the The Cryo-Em Structure of Mpxv E5 C-Terminal in Complex with Dna, PDB code: 8xj8:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the The Cryo-Em Structure of Mpxv E5 C-Terminal in Complex with Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Cryo-Em Structure of Mpxv E5 C-Terminal in Complex with Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:29.4 occ:1.00 OG A:SER510 2.1 35.8 1.0 O2B A:ANP801 2.1 21.2 1.0 O3G A:ANP801 2.5 26.5 1.0 CB A:SER510 3.3 20.9 1.0 PB A:ANP801 3.4 10.8 1.0 PG A:ANP801 3.6 13.0 1.0 N3B A:ANP801 3.7 26.2 1.0 O1B A:ANP801 4.1 22.6 1.0 N A:SER510 4.1 23.8 1.0 CA A:SER510 4.2 15.0 1.0 O2G A:ANP801 4.3 31.1 1.0 O1A A:ANP801 4.3 31.4 1.0 NH2 B:ARG620 4.5 21.5 1.0 OE1 B:GLU579 4.5 42.2 1.0 O3A A:ANP801 4.6 21.4 1.0 OE1 A:GLU557 4.7 41.5 1.0 OE2 B:GLU579 4.7 37.3 1.0 O1G A:ANP801 4.8 29.4 1.0 PA A:ANP801 4.8 15.5 1.0 O2A A:ANP801 4.9 21.2 1.0 CD B:GLU579 5.0 33.9 1.0

Magnesium binding site 2 out of 3 in the The Cryo-Em Structure of Mpxv E5 C-Terminal in Complex with Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Cryo-Em Structure of Mpxv E5 C-Terminal in Complex with Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:14.2 occ:1.00 O2G B:ANP801 2.1 28.8 1.0 OG B:SER510 2.2 35.5 1.0 O2B B:ANP801 2.3 18.4 1.0 PG B:ANP801 3.4 4.7 1.0 CB B:SER510 3.4 19.8 1.0 PB B:ANP801 3.5 8.5 1.0 N3B B:ANP801 3.7 29.1 1.0 OE1 C:GLU579 4.0 41.6 1.0 NH2 C:ARG620 4.1 21.3 1.0 O1B B:ANP801 4.2 12.6 1.0 O1G B:ANP801 4.2 25.5 1.0 N B:SER510 4.3 18.8 1.0 CA B:SER510 4.4 6.2 1.0 O3G B:ANP801 4.5 27.2 1.0 O1A B:ANP801 4.6 32.9 1.0 CD C:GLU579 4.6 44.2 1.0 OE2 C:GLU579 4.7 44.8 1.0 O3A B:ANP801 4.7 22.7 1.0

Magnesium binding site 3 out of 3 in the The Cryo-Em Structure of Mpxv E5 C-Terminal in Complex with Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Cryo-Em Structure of Mpxv E5 C-Terminal in Complex with Dna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg802 b:31.5 occ:1.00 O3G C:ANP801 2.0 34.0 1.0 OG C:SER510 2.2 33.8 1.0 O2B C:ANP801 2.4 18.4 1.0 PG C:ANP801 3.3 19.2 1.0 CB C:SER510 3.4 17.6 1.0 PB C:ANP801 3.5 17.6 1.0 N3B C:ANP801 3.6 35.3 1.0 NH2 D:ARG620 4.1 42.4 1.0 O2G C:ANP801 4.2 34.4 1.0 O1A C:ANP801 4.2 34.8 1.0 OE2 D:GLU579 4.3 55.3 1.0 O1G C:ANP801 4.4 33.3 1.0 O1B C:ANP801 4.4 20.1 1.0 CA C:SER510 4.5 12.0 1.0 N C:SER510 4.5 14.4 1.0 O3A C:ANP801 4.7 29.0 1.0 OE2 C:GLU557 4.8 48.4 1.0 PA C:ANP801 4.8 22.2 1.0 OE1 D:GLU579 4.9 54.1 1.0 O2A C:ANP801 4.9 33.9 1.0 CD D:GLU579 5.0 54.7 1.0 CD C:GLU557 5.0 51.1 1.0

J.Gan, W.Zhang. Structural and Functional Insights Into the Helicase Protein E5 of Mpox Virus. Cell Discov 2024.
ISSN: ESSN 2056-5968