Magnesium in PDB 8xku: Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Atp-Bound State

All present enzymatic activity of Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Atp-Bound State:
1.1.1.37;

The structure of Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Atp-Bound State also contains other interesting chemical elements:

Zinc

(Zn)

3 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Atp-Bound State (pdb code 8xku). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Atp-Bound State, PDB code: 8xku:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Atp-Bound State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Atp-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg901 b:98.0 occ:1.00 O2B A:ATP902 2.1 52.8 1.0 OG1 A:THR363 2.2 111.7 1.0 O2G A:ATP902 3.1 52.8 1.0 CB A:THR363 3.3 116.0 1.0 PB A:ATP902 3.6 52.8 1.0 OD2 A:ASP415 3.7 118.2 1.0 O2A A:ATP902 3.7 52.8 1.0 OD1 A:ASP415 3.8 119.8 1.0 O3G A:ATP902 3.9 52.8 1.0 PG A:ATP902 4.0 52.8 1.0 CG2 A:THR363 4.1 117.5 1.0 NH2 F:ARG570 4.1 127.0 1.0 CG A:ASP415 4.2 118.9 1.0 O3B A:ATP902 4.3 52.8 1.0 N A:THR363 4.5 112.2 1.0 O F:GLY542 4.5 117.1 1.0 CA A:THR363 4.5 119.2 1.0 O3A A:ATP902 4.5 52.8 1.0 CA F:GLY542 4.5 116.6 1.0 O1B A:ATP902 4.5 52.8 1.0 PA A:ATP902 4.6 52.8 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Atp-Bound State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Atp-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1101 b:95.3 occ:1.00 O2G B:ATP1103 2.4 52.8 1.0 OD1 B:ASP591 2.9 108.8 1.0 O2B B:ATP1103 2.9 52.8 1.0 OD2 B:ASP591 3.0 112.1 1.0 CG B:ASP591 3.1 112.2 1.0 O3G B:ATP1103 3.1 52.8 1.0 PG B:ATP1103 3.3 52.8 1.0 CB B:GLU592 3.9 116.5 1.0 PB B:ATP1103 4.1 52.8 1.0 N B:GLU592 4.2 120.4 1.0 O3B B:ATP1103 4.2 52.8 1.0 CG B:GLU592 4.3 118.8 1.0 CB B:ASP591 4.3 117.6 1.0 O1G B:ATP1103 4.5 52.8 1.0 CA B:GLU592 4.5 120.4 1.0 CD B:GLU592 4.5 119.0 1.0 OE1 B:GLU592 4.6 113.8 1.0 ND2 B:ASN643 4.7 110.5 1.0 C B:ASP591 4.8 118.8 1.0 O2A B:ATP1103 5.0 52.8 1.0

K.Liang, Z.Jin, X.Zhan, Y.Li, Q.Xu, Y.Xie, Y.Yang, S.Wang, J.Wu, Z.Yan. Structural Insights Into the Chloroplast Protein Import in Land Plants. Cell 2024.
ISSN: ISSN 1097-4172
PubMed: 39197452
DOI: 10.1016/J.CELL.2024.08.003