Magnesium in PDB 8xlp: Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina

Enzymatic activity of Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina

All present enzymatic activity of Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina:
1.10.3.9;

Other elements in 8xlp:

The structure of Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina also contains other interesting chemical elements:

Manganese (Mn) 4 atoms
Chlorine (Cl) 4 atoms
Iron (Fe) 4 atoms

Magnesium Binding Sites:

Magnesium binding site 1 out of 218 in 8xlp

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Magnesium binding site 1 out of 218 in the Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg403

b:21.1
occ:1.00
MG a:CLA403 0.0 21.1 1.0
NE2 a:HIS198 1.9 18.8 1.0
NB a:CLA403 2.0 11.1 1.0
ND a:CLA403 2.0 13.5 1.0
NC a:CLA403 2.1 15.1 1.0
NA a:CLA403 2.1 16.9 1.0
CE1 a:HIS198 2.6 8.8 1.0
C4D a:CLA403 2.9 11.1 1.0
C1B a:CLA403 3.0 9.0 1.0
C4B a:CLA403 3.1 8.8 1.0
C4A a:CLA403 3.1 9.2 1.0
C1C a:CLA403 3.1 12.8 1.0
CD2 a:HIS198 3.1 17.3 1.0
C1A a:CLA403 3.2 14.7 1.0
C4C a:CLA403 3.2 10.0 1.0
C1D a:CLA403 3.2 9.2 1.0
CHB a:CLA403 3.4 12.3 1.0
CHC a:CLA403 3.5 15.3 1.0
CHA a:CLA403 3.5 14.1 1.0
CBB d:CLA403 3.5 22.9 1.0
CHD a:CLA403 3.6 10.8 1.0
ND1 a:HIS198 3.8 0.0 1.0
CG a:HIS198 4.1 13.4 1.0
CE a:MET183 4.2 15.0 1.0
C3D a:CLA403 4.3 7.6 1.0
C2B a:CLA403 4.3 11.3 1.0
C3B a:CLA403 4.3 13.2 1.0
C2D a:CLA403 4.4 7.6 1.0
C2C a:CLA403 4.4 10.0 1.0
C3C a:CLA403 4.4 13.9 1.0
C3A a:CLA403 4.4 9.3 1.0
C2A a:CLA403 4.5 13.2 1.0
CG2 a:VAL202 4.7 13.8 1.0
CAB d:CLA403 4.8 14.5 1.0
CBD a:CLA403 4.9 8.3 1.0

Magnesium binding site 2 out of 218 in 8xlp

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Magnesium binding site 2 out of 218 in the Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg404

b:23.0
occ:1.00
MG a:CLA404 0.0 23.0 1.0
NB a:CLA404 2.0 17.9 1.0
ND a:CLA404 2.0 17.2 1.0
NC a:CLA404 2.1 14.1 1.0
NA a:CLA404 2.1 15.2 1.0
C4D a:CLA404 2.9 13.1 1.0
C1B a:CLA404 3.0 9.2 1.0
C4B a:CLA404 3.1 11.7 1.0
C4A a:CLA404 3.1 17.5 1.0
C1C a:CLA404 3.1 11.2 1.0
C4C a:CLA404 3.2 12.6 1.0
C1D a:CLA404 3.2 13.4 1.0
C1A a:CLA404 3.2 15.2 1.0
CHB a:CLA404 3.4 12.8 1.0
CHC a:CLA404 3.4 13.7 1.0
CHA a:CLA404 3.5 12.5 1.0
CHD a:CLA404 3.6 14.4 1.0
C3D a:CLA404 4.3 13.8 1.0
C2B a:CLA404 4.3 15.4 1.0
CBB d:PHO401 4.3 22.6 1.0
C3B a:CLA404 4.3 17.2 1.0
C2C a:CLA404 4.4 15.6 1.0
C2D a:CLA404 4.4 9.0 1.0
C3C a:CLA404 4.4 15.9 1.0
C3A a:CLA404 4.4 15.5 1.0
C2A a:CLA404 4.5 16.1 1.0
CG2 d:ILE177 4.5 22.2 1.0
O1A a:CLA404 4.7 35.0 1.0
CG1 d:ILE177 4.7 22.5 1.0
C20 d:PHO401 4.8 26.6 1.0
C19 d:PHO401 4.9 26.3 1.0
CBD a:CLA404 5.0 14.0 1.0

Magnesium binding site 3 out of 218 in 8xlp

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Magnesium binding site 3 out of 218 in the Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg406

b:27.9
occ:1.00
MG a:CLA406 0.0 27.9 1.0
NE2 a:HIS118 1.9 24.6 1.0
NB a:CLA406 2.0 20.8 1.0
ND a:CLA406 2.0 25.3 1.0
NC a:CLA406 2.1 24.4 1.0
NA a:CLA406 2.1 23.3 1.0
CE1 a:HIS118 2.6 15.8 1.0
C4D a:CLA406 2.9 24.1 1.0
C1B a:CLA406 3.0 17.9 1.0
C4B a:CLA406 3.1 21.3 1.0
C4A a:CLA406 3.1 20.4 1.0
C1C a:CLA406 3.1 24.6 1.0
CD2 a:HIS118 3.1 21.1 1.0
C1A a:CLA406 3.2 23.2 1.0
C4C a:CLA406 3.2 20.8 1.0
C1D a:CLA406 3.2 23.9 1.0
CHB a:CLA406 3.4 21.3 1.0
CHC a:CLA406 3.5 23.2 1.0
CHA a:CLA406 3.5 21.4 1.0
CHD a:CLA406 3.6 21.7 1.0
ND1 a:HIS118 3.8 12.9 1.0
CG a:HIS118 4.1 20.1 1.0
C3D a:CLA406 4.3 22.6 1.0
C2B a:CLA406 4.3 22.0 1.0
C3B a:CLA406 4.3 20.9 1.0
C2C a:CLA406 4.4 24.4 1.0
C2D a:CLA406 4.4 22.4 1.0
C3C a:CLA406 4.4 24.6 1.0
CG2 i:VAL12 4.4 21.0 1.0
C3A a:CLA406 4.4 23.4 1.0
C2A a:CLA406 4.5 22.9 1.0
CG1 i:VAL8 4.7 19.1 1.0
CBD a:CLA406 4.9 17.2 1.0
CG2 a:THR43 5.0 22.4 1.0

Magnesium binding site 4 out of 218 in 8xlp

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Magnesium binding site 4 out of 218 in the Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Mg601

b:38.2
occ:1.00
MG b:CLA601 0.0 38.2 1.0
NB b:CLA601 2.0 30.9 1.0
ND b:CLA601 2.0 32.3 1.0
NC b:CLA601 2.1 28.5 1.0
NA b:CLA601 2.1 33.0 1.0
C4D b:CLA601 2.9 29.6 1.0
C1B b:CLA601 3.0 26.6 1.0
C4B b:CLA601 3.1 30.0 1.0
C4A b:CLA601 3.1 31.4 1.0
C1C b:CLA601 3.1 29.1 1.0
C4C b:CLA601 3.2 28.2 1.0
C1D b:CLA601 3.2 29.8 1.0
C1A b:CLA601 3.2 33.1 1.0
CHB b:CLA601 3.4 28.2 1.0
CHC b:CLA601 3.4 29.3 1.0
CHA b:CLA601 3.5 30.2 1.0
CHD b:CLA601 3.6 32.3 1.0
O1A b:CLA601 4.1 40.8 1.0
C3D b:CLA601 4.3 32.9 1.0
C2B b:CLA601 4.3 28.9 1.0
C3B b:CLA601 4.3 29.3 1.0
C2C b:CLA601 4.4 30.9 1.0
C2D b:CLA601 4.4 30.0 1.0
C3C b:CLA601 4.4 29.0 1.0
C3A b:CLA601 4.4 30.9 1.0
C2A b:CLA601 4.5 29.7 1.0
O b:TRP185 4.5 34.4 1.0
CBB b:CLA602 4.9 24.1 1.0
CBD b:CLA601 4.9 28.1 1.0
CE2 b:PHE190 4.9 28.3 1.0
CGA b:CLA601 5.0 38.5 1.0

Magnesium binding site 5 out of 218 in 8xlp

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Magnesium binding site 5 out of 218 in the Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Mg602

b:29.5
occ:1.00
MG b:CLA602 0.0 29.5 1.0
ND1 b:HIS201 1.9 23.7 1.0
NB b:CLA602 2.0 20.5 1.0
ND b:CLA602 2.0 19.7 1.0
NC b:CLA602 2.1 15.7 1.0
NA b:CLA602 2.1 16.1 1.0
CE1 b:HIS201 2.5 19.7 1.0
C4D b:CLA602 2.9 15.6 1.0
C1B b:CLA602 3.0 16.5 1.0
C4B b:CLA602 3.1 14.9 1.0
C4A b:CLA602 3.1 20.3 1.0
C1C b:CLA602 3.1 15.3 1.0
CG b:HIS201 3.1 19.9 1.0
C1A b:CLA602 3.2 18.4 1.0
C4C b:CLA602 3.2 18.3 1.0
C1D b:CLA602 3.2 17.3 1.0
CHB b:CLA602 3.4 17.6 1.0
CHC b:CLA602 3.4 19.2 1.0
CHA b:CLA602 3.5 16.8 1.0
CHD b:CLA602 3.6 21.8 1.0
NE2 b:HIS201 3.7 17.0 1.0
CB b:HIS201 3.8 15.2 1.0
CZ h:PHE41 3.8 14.4 1.0
CD2 b:HIS201 4.0 14.9 1.0
C3D b:CLA602 4.2 17.1 1.0
C2B b:CLA602 4.3 19.6 1.0
C3B b:CLA602 4.3 17.4 1.0
C2C b:CLA602 4.3 19.3 1.0
C2D b:CLA602 4.4 16.2 1.0
C3C b:CLA602 4.4 17.6 1.0
C3A b:CLA602 4.4 24.1 1.0
CE2 h:PHE41 4.5 15.4 1.0
C2A b:CLA602 4.5 18.9 1.0
CA b:HIS201 4.5 14.6 1.0
CE1 b:PHE190 4.8 23.5 1.0
CE1 h:PHE41 4.9 18.9 1.0
CBD b:CLA602 4.9 13.2 1.0

Magnesium binding site 6 out of 218 in 8xlp

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Magnesium binding site 6 out of 218 in the Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Mg603

b:30.5
occ:1.00
MG b:CLA603 0.0 30.5 1.0
NE2 b:HIS202 1.9 20.5 1.0
NB b:CLA603 2.0 15.1 1.0
ND b:CLA603 2.0 10.6 1.0
NC b:CLA603 2.1 15.1 1.0
NA b:CLA603 2.1 15.4 1.0
CE1 b:HIS202 2.8 15.0 1.0
C4D b:CLA603 2.9 7.9 1.0
CD2 b:HIS202 3.0 13.6 1.0
C1B b:CLA603 3.0 16.4 1.0
C4A b:CLA603 3.1 13.6 1.0
C4B b:CLA603 3.1 10.2 1.0
C1C b:CLA603 3.1 14.8 1.0
C4C b:CLA603 3.2 10.3 1.0
C1D b:CLA603 3.2 12.7 1.0
C1A b:CLA603 3.2 16.4 1.0
CHB b:CLA603 3.4 17.2 1.0
CHC b:CLA603 3.5 13.5 1.0
CHA b:CLA603 3.5 14.6 1.0
CHD b:CLA603 3.6 15.8 1.0
ND1 b:HIS202 3.9 12.8 1.0
CG b:HIS202 4.0 16.2 1.0
C6 b:CLA605 4.1 16.4 1.0
C3D b:CLA603 4.3 10.2 1.0
C2B b:CLA603 4.3 16.0 1.0
C3B b:CLA603 4.3 16.0 1.0
C2C b:CLA603 4.4 16.6 1.0
C2D b:CLA603 4.4 13.7 1.0
C9 b:CLA605 4.4 18.1 1.0
C3C b:CLA603 4.4 21.0 1.0
C3A b:CLA603 4.4 12.9 1.0
C2A b:CLA603 4.5 17.2 1.0
C7 b:CLA605 4.7 19.4 1.0
CBD b:CLA603 4.9 16.7 1.0

Magnesium binding site 7 out of 218 in 8xlp

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Magnesium binding site 7 out of 218 in the Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Mg604

b:28.1
occ:1.00
MG b:CLA604 0.0 28.1 1.0
NE2 b:HIS455 1.9 20.9 1.0
NB b:CLA604 2.0 13.1 1.0
ND b:CLA604 2.0 17.2 1.0
NC b:CLA604 2.1 11.6 1.0
NA b:CLA604 2.1 14.0 1.0
CE1 b:HIS455 2.7 11.5 1.0
C4D b:CLA604 2.9 12.4 1.0
C1B b:CLA604 3.0 13.7 1.0
CD2 b:HIS455 3.0 11.9 1.0
C4B b:CLA604 3.1 10.3 1.0
C4A b:CLA604 3.1 16.8 1.0
C1C b:CLA604 3.1 16.6 1.0
C4C b:CLA604 3.2 11.0 1.0
C1A b:CLA604 3.2 16.4 1.0
C1D b:CLA604 3.2 15.6 1.0
CHB b:CLA604 3.4 13.1 1.0
CHC b:CLA604 3.4 18.5 1.0
CHA b:CLA604 3.5 17.4 1.0
CHD b:CLA604 3.6 18.4 1.0
ND1 b:HIS455 3.8 3.8 1.0
C14 b:CLA612 3.9 18.3 1.0
CG b:HIS455 4.0 9.3 1.0
C3D b:CLA604 4.3 15.3 1.0
C2B b:CLA604 4.3 16.1 1.0
CBB b:CLA613 4.3 17.9 1.0
C3B b:CLA604 4.3 16.6 1.0
C2C b:CLA604 4.3 8.4 1.0
C2D b:CLA604 4.4 14.9 1.0
C3C b:CLA604 4.4 13.8 1.0
C3A b:CLA604 4.4 15.4 1.0
C2A b:CLA604 4.5 17.1 1.0
C13 b:CLA612 4.6 18.8 1.0
CE2 b:TYR451 4.7 15.4 1.0
C15 b:CLA612 4.9 15.4 1.0
OH b:TYR451 4.9 25.3 1.0
CBD b:CLA604 4.9 12.0 1.0

Magnesium binding site 8 out of 218 in 8xlp

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Magnesium binding site 8 out of 218 in the Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Mg605

b:25.5
occ:1.00
MG b:CLA605 0.0 25.5 1.0
NE2 b:HIS100 1.9 21.0 1.0
NB b:CLA605 2.0 19.2 1.0
ND b:CLA605 2.0 15.0 1.0
NC b:CLA605 2.1 17.1 1.0
NA b:CLA605 2.1 19.5 1.0
CE1 b:HIS100 2.7 16.0 1.0
C4D b:CLA605 2.9 11.5 1.0
C1B b:CLA605 3.0 15.0 1.0
C4B b:CLA605 3.1 13.3 1.0
C4A b:CLA605 3.1 15.5 1.0
CD2 b:HIS100 3.1 18.7 1.0
C1C b:CLA605 3.1 12.7 1.0
C1A b:CLA605 3.2 18.1 1.0
C4C b:CLA605 3.2 11.1 1.0
C1D b:CLA605 3.2 15.8 1.0
CHB b:CLA605 3.4 16.8 1.0
CHC b:CLA605 3.4 15.7 1.0
CHA b:CLA605 3.5 14.6 1.0
CHD b:CLA605 3.6 16.3 1.0
ND1 b:HIS100 3.9 13.4 1.0
CG b:HIS100 4.1 18.4 1.0
C2 b:CLA604 4.1 16.5 1.0
C3 b:CLA604 4.2 24.7 1.0
C3D b:CLA605 4.3 15.4 1.0
C2B b:CLA605 4.3 15.3 1.0
C3B b:CLA605 4.3 14.5 1.0
C2C b:CLA605 4.4 14.3 1.0
C2D b:CLA605 4.4 16.6 1.0
C3C b:CLA605 4.4 15.0 1.0
C3A b:CLA605 4.4 14.1 1.0
C5 b:CLA604 4.5 24.3 1.0
C2A b:CLA605 4.5 20.7 1.0
C1 b:CLA604 4.6 19.9 1.0
O1A b:CLA604 4.7 29.2 1.0
C4 b:CLA604 4.9 19.8 1.0
CBD b:CLA605 4.9 14.1 1.0

Magnesium binding site 9 out of 218 in 8xlp

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Magnesium binding site 9 out of 218 in the Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Mg606

b:31.9
occ:1.00
MG b:CLA606 0.0 31.9 1.0
NB b:CLA606 2.0 24.9 1.0
ND b:CLA606 2.0 22.5 1.0
NC b:CLA606 2.1 26.8 1.0
NA b:CLA606 2.1 24.5 1.0
CD2 b:HIS157 2.9 15.5 1.0
C4D b:CLA606 2.9 21.0 1.0
C1B b:CLA606 3.0 22.4 1.0
C4A b:CLA606 3.1 18.0 1.0
C4B b:CLA606 3.1 18.4 1.0
C1C b:CLA606 3.1 21.0 1.0
C4C b:CLA606 3.2 23.3 1.0
C1A b:CLA606 3.2 24.1 1.0
C1D b:CLA606 3.2 20.7 1.0
CHB b:CLA606 3.4 19.6 1.0
CHC b:CLA606 3.4 18.8 1.0
CHA b:CLA606 3.5 23.0 1.0
CHD b:CLA606 3.6 19.1 1.0
NE2 b:HIS157 3.8 19.0 1.0
CG b:HIS157 3.8 16.1 1.0
CB b:HIS157 4.2 18.0 1.0
C3D b:CLA606 4.3 22.9 1.0
C2B b:CLA606 4.3 24.7 1.0
C3B b:CLA606 4.3 20.9 1.0
C2C b:CLA606 4.4 17.1 1.0
C2D b:CLA606 4.4 23.2 1.0
C3C b:CLA606 4.4 21.9 1.0
C3A b:CLA606 4.4 23.6 1.0
C2A b:CLA606 4.5 26.3 1.0
CE1 b:HIS157 4.9 23.9 1.0
ND1 b:HIS157 4.9 30.0 1.0
CBD b:CLA606 4.9 17.1 1.0

Magnesium binding site 10 out of 218 in 8xlp

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Magnesium binding site 10 out of 218 in the Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Mg607

b:27.8
occ:1.00
MG b:CLA607 0.0 27.8 1.0
NB b:CLA607 2.0 24.3 1.0
ND b:CLA607 2.0 24.6 1.0
NC b:CLA607 2.1 23.8 1.0
NA b:CLA607 2.1 19.8 1.0
C4D b:CLA607 2.9 22.8 1.0
C1B b:CLA607 3.0 18.3 1.0
C4A b:CLA607 3.1 20.2 1.0
C4B b:CLA607 3.1 18.0 1.0
C1C b:CLA607 3.1 21.4 1.0
C4C b:CLA607 3.2 20.3 1.0
C1A b:CLA607 3.2 20.4 1.0
C1D b:CLA607 3.2 21.5 1.0
C14 b:LMG620 3.3 25.9 1.0
CHB b:CLA607 3.4 23.5 1.0
CHC b:CLA607 3.5 20.1 1.0
CHA b:CLA607 3.5 21.7 1.0
CHD b:CLA607 3.6 22.5 1.0
C12 b:LMG620 4.2 29.2 1.0
C13 b:LMG620 4.2 31.9 1.0
C3D b:CLA607 4.3 21.3 1.0
C2B b:CLA607 4.3 22.8 1.0
C3B b:CLA607 4.3 25.6 1.0
C2C b:CLA607 4.4 22.0 1.0
C2D b:CLA607 4.4 22.5 1.0
C3C b:CLA607 4.4 23.1 1.0
C15 b:LMG620 4.4 29.4 1.0
C3A b:CLA607 4.4 21.7 1.0
C2A b:CLA607 4.5 19.6 1.0
CE b:MET37 4.5 22.3 1.0
SD b:MET37 4.6 24.8 1.0
CD2 b:PHE61 4.7 22.6 1.0
CBA b:CLA607 4.9 21.2 1.0
CB b:PHE61 4.9 24.7 1.0
CBD b:CLA607 4.9 20.7 1.0
CG b:PHE61 5.0 25.6 1.0

Reference:

L.Si, M.Li. Structure of Inactive Photosystem II Associated with Cac Antenna From Rhodomonas Salina To Be Published.
Page generated: Sat Oct 5 07:48:13 2024

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