Magnesium in PDB 8xm7: Cryo-Em Structure of the Rhog/DOCK5/ELMO1/RAC1 Complex: Rhog/DOCK5/ELMO1 Focused Map

The binding sites of Magnesium atom in the Cryo-Em Structure of the Rhog/DOCK5/ELMO1/RAC1 Complex: Rhog/DOCK5/ELMO1 Focused Map (pdb code 8xm7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of the Rhog/DOCK5/ELMO1/RAC1 Complex: Rhog/DOCK5/ELMO1 Focused Map, PDB code: 8xm7:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of the Rhog/DOCK5/ELMO1/RAC1 Complex: Rhog/DOCK5/ELMO1 Focused Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Rhog/DOCK5/ELMO1/RAC1 Complex: Rhog/DOCK5/ELMO1 Focused Map within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg201 b:799.0 occ:1.00 O2G D:GTP202 2.0 765.1 1.0 O1B D:GTP202 2.1 765.1 1.0 PG D:GTP202 2.4 765.1 1.0 CE D:LYS16 2.6 797.6 1.0 O3G D:GTP202 2.6 765.1 1.0 O3B D:GTP202 2.7 765.1 1.0 OG1 D:THR35 2.8 784.0 1.0 PB D:GTP202 2.9 765.1 1.0 O D:THR58 3.0 817.2 1.0 CB D:THR35 3.0 784.0 1.0 OD1 D:ASP57 3.2 802.5 1.0 NZ D:LYS16 3.4 797.6 1.0 CB D:LYS16 3.5 797.6 1.0 CG2 D:THR35 3.6 784.0 1.0 CD D:LYS16 3.6 797.6 1.0 N D:GLY60 3.7 787.8 1.0 OG1 D:THR17 3.8 800.1 1.0 O2B D:GTP202 3.8 765.1 1.0 O1G D:GTP202 3.9 765.1 1.0 C D:THR58 3.9 817.2 1.0 N D:THR17 4.0 800.1 1.0 CG D:LYS16 4.1 797.6 1.0 CA D:ALA59 4.2 805.1 1.0 O3A D:GTP202 4.2 765.1 1.0 CG D:ASP57 4.3 802.5 1.0 C D:ALA59 4.3 805.1 1.0 CA D:THR35 4.4 784.0 1.0 N D:ALA59 4.5 805.1 1.0 CA D:LYS16 4.6 797.6 1.0 OD2 D:ASP57 4.6 802.5 1.0 CB D:THR17 4.7 800.1 1.0 CA D:GLY60 4.7 787.8 1.0 N D:THR35 4.7 784.0 1.0 C D:LYS16 4.7 797.6 1.0 N D:THR58 4.8 817.2 1.0 CA D:THR17 4.9 800.1 1.0 N D:LYS16 4.9 797.6 1.0

M.Kukimoto-Niino, K.Katsura, Y.Ishizuka-Katsura, C.Mishima-Tsumagari, M.Yonemochi, M.Inoue, R.Nakagawa, R.Kaushik, K.Y.J.Zhang, M.Shirouzu. Rhog Facilitates A Conformational Transition in the Guanine Nucleotide Exchange Factor Complex DOCK5/ELMO1 to An Open State. J.Biol.Chem. 07459 2024.
ISSN: ESSN 1083-351X
PubMed: 38857861
DOI: 10.1016/J.JBC.2024.107459