Magnesium in PDB 8xoq: Human Calcium and Integrin Binding Protein 2 (CIB2) Fusion to TMC1 Cbd-1 Domain at 2.4 Angstroms Resolution

Protein crystallography data

The structure of Human Calcium and Integrin Binding Protein 2 (CIB2) Fusion to TMC1 Cbd-1 Domain at 2.4 Angstroms Resolution, PDB code: 8xoq was solved by Y.H.Li, J.S.Chen, X.Zhang, C.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.55 / 2.41
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 32.065, 121.849, 62.208, 90, 91.74, 90
R / Rfree (%) 20.1 / 24.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human Calcium and Integrin Binding Protein 2 (CIB2) Fusion to TMC1 Cbd-1 Domain at 2.4 Angstroms Resolution (pdb code 8xoq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Human Calcium and Integrin Binding Protein 2 (CIB2) Fusion to TMC1 Cbd-1 Domain at 2.4 Angstroms Resolution, PDB code: 8xoq:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 8xoq

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Magnesium binding site 1 out of 4 in the Human Calcium and Integrin Binding Protein 2 (CIB2) Fusion to TMC1 Cbd-1 Domain at 2.4 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Calcium and Integrin Binding Protein 2 (CIB2) Fusion to TMC1 Cbd-1 Domain at 2.4 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:25.9
occ:1.00
 O A:PHE181 1.9 32.8 1.0
OD2 A:ASP186 1.9 31.0 1.0
OD1 A:ASN177 2.0 37.0 1.0
OD1 A:ASP175 2.0 32.5 1.0
O A:HOH412 2.0 30.4 1.0
OD1 A:ASP179 2.1 35.0 1.0
CG A:ASN177 3.0 34.9 1.0
CG A:ASP179 3.0 33.8 1.0
C A:PHE181 3.0 31.7 1.0
CG A:ASP186 3.1 31.0 1.0
CG A:ASP175 3.1 31.1 1.0
OD2 A:ASP179 3.3 35.0 1.0
ND2 A:ASN177 3.4 34.1 1.0
OD1 A:ASP186 3.6 34.4 1.0
OD2 A:ASP175 3.8 35.1 1.0
N A:PHE181 3.8 31.7 1.0
CA A:PHE181 3.9 32.2 1.0
N A:ILE182 3.9 30.2 1.0
CA A:ILE182 4.1 28.2 1.0
CB A:ASP175 4.1 29.1 1.0
N A:ASP179 4.2 35.5 1.0
CA A:ASP175 4.2 27.7 1.0
CB A:PHE181 4.3 33.3 1.0
CB A:ASP179 4.3 33.4 1.0
CB A:ASP186 4.3 31.4 1.0
N A:CYS183 4.3 29.7 1.0
CB A:ASN177 4.3 33.9 1.0
N A:ASN177 4.4 34.7 1.0
SG A:CYS183 4.5 35.8 1.0
N A:THR178 4.6 34.8 1.0
C A:ILE182 4.6 28.4 1.0
C A:ASP175 4.6 29.1 1.0
CA A:ASN177 4.7 34.9 1.0
CA A:ASP179 4.7 33.5 1.0
C A:ASN177 4.7 34.3 1.0
N A:ASN180 4.8 32.5 1.0
C A:ASP179 4.9 31.2 1.0
N A:PHE176 4.9 29.4 1.0
CD1 A:ILE182 5.0 26.7 1.0

Magnesium binding site 2 out of 4 in 8xoq

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Magnesium binding site 2 out of 4 in the Human Calcium and Integrin Binding Protein 2 (CIB2) Fusion to TMC1 Cbd-1 Domain at 2.4 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human Calcium and Integrin Binding Protein 2 (CIB2) Fusion to TMC1 Cbd-1 Domain at 2.4 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:35.0
occ:1.00
 O A:HOH416 1.9 35.8 1.0
O A:LYS222 1.9 35.5 1.0
O A:HOH402 2.0 29.4 1.0
OD1 A:ASP216 2.0 38.1 1.0
OD1 A:ASP218 2.0 40.5 1.0
OD1 A:ASP220 2.2 34.9 1.0
CG A:ASP218 2.9 39.2 1.0
CG A:ASP220 3.0 35.9 1.0
OD2 A:ASP218 3.1 38.2 1.0
C A:LYS222 3.2 35.5 1.0
CG A:ASP216 3.2 36.7 1.0
OD2 A:ASP220 3.2 38.4 1.0
OD2 A:ASP216 3.8 39.6 1.0
N A:LYS222 4.0 37.9 1.0
N A:LEU223 4.1 33.6 1.0
CA A:LYS222 4.1 37.9 1.0
CA A:LEU223 4.2 31.0 1.0
OD2 A:ASP227 4.3 39.9 1.0
CB A:ASP218 4.3 40.2 1.0
CB A:ASP216 4.4 37.3 1.0
CB A:ASP220 4.5 36.5 1.0
CB A:LYS222 4.5 43.3 1.0
N A:ASP218 4.5 41.0 1.0
N A:ASP220 4.6 37.3 1.0
N A:GLY224 4.7 30.8 1.0
CA A:ASP216 4.7 37.4 1.0
C A:LEU223 4.7 29.9 1.0
CA A:ASP218 4.8 39.5 1.0
N A:LEU217 4.8 36.9 1.0
N A:GLY221 4.9 37.3 1.0
N A:GLY219 4.9 40.0 1.0
CA A:ASP220 4.9 36.7 1.0

Magnesium binding site 3 out of 4 in 8xoq

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Magnesium binding site 3 out of 4 in the Human Calcium and Integrin Binding Protein 2 (CIB2) Fusion to TMC1 Cbd-1 Domain at 2.4 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human Calcium and Integrin Binding Protein 2 (CIB2) Fusion to TMC1 Cbd-1 Domain at 2.4 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:34.7
occ:1.00
 OD2 B:ASP186 1.9 37.7 1.0
OD1 B:ASP179 2.0 46.4 1.0
O B:PHE181 2.0 34.1 1.0
OD1 B:ASN177 2.1 40.5 1.0
OD1 B:ASP175 2.1 33.8 1.0
O B:HOH414 2.2 34.5 1.0
CG B:ASP179 2.8 43.4 1.0
OD2 B:ASP179 3.0 43.9 1.0
CG B:ASN177 3.1 36.9 1.0
CG B:ASP186 3.1 37.6 1.0
C B:PHE181 3.1 34.4 1.0
CG B:ASP175 3.2 34.5 1.0
ND2 B:ASN177 3.5 34.4 1.0
OD1 B:ASP186 3.6 39.4 1.0
OD2 B:ASP175 3.9 39.1 1.0
N B:PHE181 3.9 36.2 1.0
CA B:PHE181 3.9 37.0 1.0
N B:ILE182 4.0 33.1 1.0
CA B:ILE182 4.1 34.1 1.0
CB B:ASP179 4.1 41.7 1.0
N B:ASP179 4.2 43.6 1.0
CB B:ASP175 4.2 32.4 1.0
N B:CYS183 4.2 40.1 1.0
CB B:PHE181 4.2 40.5 1.0
CB B:ASP186 4.3 37.6 1.0
CA B:ASP175 4.3 32.0 1.0
SG B:CYS183 4.4 43.3 1.0
CB B:ASN177 4.4 36.4 1.0
N B:ASN177 4.5 35.8 1.0
N B:THR178 4.6 40.1 1.0
CA B:ASP179 4.6 40.4 1.0
C B:ILE182 4.7 37.4 1.0
C B:ASN177 4.7 39.5 1.0
C B:ASP175 4.7 31.8 1.0
CA B:ASN177 4.7 37.7 1.0
N B:ASN180 4.8 39.5 1.0
C B:ASP179 4.9 39.0 1.0
N B:PHE176 5.0 32.8 1.0

Magnesium binding site 4 out of 4 in 8xoq

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Magnesium binding site 4 out of 4 in the Human Calcium and Integrin Binding Protein 2 (CIB2) Fusion to TMC1 Cbd-1 Domain at 2.4 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Human Calcium and Integrin Binding Protein 2 (CIB2) Fusion to TMC1 Cbd-1 Domain at 2.4 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg302

b:36.2
occ:1.00
 OD1 B:ASP216 1.9 47.2 1.0
O B:HOH407 2.0 36.7 1.0
OD1 B:ASP220 2.1 37.8 1.0
O B:LYS222 2.1 39.6 1.0
OD1 B:ASP218 2.1 42.1 1.0
O B:HOH408 2.2 26.4 1.0
CG B:ASP218 2.9 42.5 1.0
CG B:ASP220 3.0 37.9 1.0
CG B:ASP216 3.1 49.2 1.0
OD2 B:ASP218 3.2 41.0 1.0
OD2 B:ASP220 3.3 37.9 1.0
C B:LYS222 3.3 39.7 1.0
OD2 B:ASP216 3.7 48.8 1.0
N B:LYS222 4.0 39.7 1.0
CA B:LYS222 4.2 39.9 1.0
CB B:ASP216 4.2 47.9 1.0
N B:LEU223 4.3 41.9 1.0
CB B:ASP218 4.3 43.1 1.0
CB B:ASP220 4.4 37.7 1.0
N B:ASP220 4.4 34.4 1.0
CA B:LEU223 4.5 39.9 1.0
N B:ASP218 4.5 51.3 1.0
OD2 B:ASP227 4.5 56.0 1.0
CA B:ASP216 4.6 52.0 1.0
CB B:LYS222 4.6 42.6 1.0
N B:GLY219 4.8 39.2 1.0
N B:GLY221 4.8 39.2 1.0
CA B:ASP218 4.8 44.3 1.0
CA B:ASP220 4.8 35.9 1.0
C B:ASP218 5.0 43.8 1.0
N B:GLY224 5.0 37.5 1.0
N B:LEU217 5.0 57.5 1.0

Reference:

Y.H.Li, J.S.Chen, X.Zhang, C.Wang. Human Calcium and Integrin Binding Protein 2 Fusion to TMC1 RBD1 Domain at 2.4 Angstroms Resolution To Be Published.
Page generated: Sat Feb 8 20:50:57 2025

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