Magnesium in PDB 8xr6: Cryo-Em Structure of Cryptophyte Photosystem II

All present enzymatic activity of Cryo-Em Structure of Cryptophyte Photosystem II:
1.10.3.9;

The structure of Cryo-Em Structure of Cryptophyte Photosystem II also contains other interesting chemical elements:

Calcium	(Ca)	2 atoms
Chlorine	(Cl)	2 atoms
Iron	(Fe)	6 atoms
Manganese	(Mn)	8 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 210; Page 22, Binding sites: 211 - 220; Page 23, Binding sites: 221 - 224;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Cryptophyte Photosystem II (pdb code 8xr6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 224 binding sites of Magnesium where determined in the Cryo-Em Structure of Cryptophyte Photosystem II, PDB code: 8xr6:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 224 in the Cryo-Em Structure of Cryptophyte Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Cryptophyte Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg405 b:19.5 occ:1.00 MG a:CLA405 0.0 19.5 1.0 NA a:CLA405 1.9 19.5 1.0 ND a:CLA405 1.9 19.5 1.0 NB a:CLA405 2.0 19.5 1.0 NC a:CLA405 2.0 19.5 1.0 C4D a:CLA405 2.9 19.5 1.0 C4A a:CLA405 2.9 19.5 1.0 NE2 a:HIS198 2.9 19.9 1.0 C1C a:CLA405 3.0 19.5 1.0 C1B a:CLA405 3.0 19.5 1.0 C1A a:CLA405 3.1 19.5 1.0 C4B a:CLA405 3.1 19.5 1.0 C4C a:CLA405 3.1 19.5 1.0 C1D a:CLA405 3.2 19.5 1.0 CHB a:CLA405 3.3 19.5 1.0 CHC a:CLA405 3.4 19.5 1.0 CHA a:CLA405 3.4 19.5 1.0 CHD a:CLA405 3.6 19.5 1.0 CE a:MET183 3.6 19.6 1.0 CE1 a:HIS198 3.8 19.9 1.0 CD2 a:HIS198 3.9 19.9 1.0 CAB d:CLA404 4.1 19.9 1.0 C3D a:CLA405 4.2 19.5 1.0 C2B a:CLA405 4.2 19.5 1.0 C3B a:CLA405 4.2 19.5 1.0 C3A a:CLA405 4.3 19.5 1.0 C2D a:CLA405 4.3 19.5 1.0 C2C a:CLA405 4.3 19.5 1.0 C3C a:CLA405 4.3 19.5 1.0 C2A a:CLA405 4.3 19.5 1.0 CHC d:CLA404 4.6 19.9 1.0 SD a:MET183 4.7 19.6 1.0 C3B d:CLA404 4.8 19.9 1.0 CBB d:CLA404 4.8 19.9 1.0 CBD a:CLA405 4.9 19.5 1.0 CAA a:CLA405 4.9 19.5 1.0 ND1 a:HIS198 5.0 19.9 1.0 C4B d:CLA404 5.0 19.9 1.0

Magnesium binding site 2 out of 224 in the Cryo-Em Structure of Cryptophyte Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Cryptophyte Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg406 b:20.6 occ:1.00 MG a:CLA406 0.0 20.6 1.0 NA a:CLA406 1.9 20.6 1.0 NB a:CLA406 1.9 20.6 1.0 ND a:CLA406 1.9 20.6 1.0 NC a:CLA406 2.0 20.6 1.0 C4D a:CLA406 2.9 20.6 1.0 C4A a:CLA406 2.9 20.6 1.0 O a:HOH518 3.0 50.0 1.0 C1C a:CLA406 3.0 20.6 1.0 C1B a:CLA406 3.0 20.6 1.0 C1A a:CLA406 3.0 20.6 1.0 C4B a:CLA406 3.1 20.6 1.0 C4C a:CLA406 3.1 20.6 1.0 C1D a:CLA406 3.2 20.6 1.0 CHB a:CLA406 3.3 20.6 1.0 CHC a:CLA406 3.4 20.6 1.0 CHA a:CLA406 3.4 20.6 1.0 CHD a:CLA406 3.6 20.6 1.0 CBB d:PHO403 3.6 21.0 1.0 C3D a:CLA406 4.2 20.6 1.0 C2B a:CLA406 4.2 20.6 1.0 C3B a:CLA406 4.2 20.6 1.0 C2C a:CLA406 4.3 20.6 1.0 C2D a:CLA406 4.3 20.6 1.0 C3A a:CLA406 4.3 20.6 1.0 C2A a:CLA406 4.3 20.6 1.0 C3C a:CLA406 4.3 20.6 1.0 CE2 a:PHE206 4.3 19.2 1.0 O a:HOH515 4.3 50.0 1.0 CBA a:CLA406 4.5 20.6 1.0 CD2 a:PHE206 4.8 19.2 1.0 CAB d:PHO403 4.8 21.0 1.0 CAA a:CLA406 4.9 20.6 1.0 CBD a:CLA406 4.9 20.6 1.0 C1 d:CLA404 4.9 19.9 1.0

Magnesium binding site 3 out of 224 in the Cryo-Em Structure of Cryptophyte Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Cryptophyte Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg408 b:23.7 occ:1.00 MG a:CLA408 0.0 23.7 1.0 NA a:CLA408 1.9 23.7 1.0 ND a:CLA408 1.9 23.7 1.0 NB a:CLA408 2.0 23.7 1.0 NC a:CLA408 2.0 23.7 1.0 NE2 a:HIS118 2.9 20.4 1.0 C4D a:CLA408 2.9 23.7 1.0 C4A a:CLA408 2.9 23.7 1.0 C1C a:CLA408 3.0 23.7 1.0 C1B a:CLA408 3.0 23.7 1.0 C1A a:CLA408 3.0 23.7 1.0 C4B a:CLA408 3.1 23.7 1.0 C4C a:CLA408 3.1 23.7 1.0 C1D a:CLA408 3.2 23.7 1.0 CHB a:CLA408 3.3 23.7 1.0 CHA a:CLA408 3.4 23.7 1.0 CHC a:CLA408 3.4 23.7 1.0 CHD a:CLA408 3.5 23.7 1.0 CE1 a:HIS118 3.7 20.4 1.0 CG2 i:VAL12 3.8 24.2 1.0 CD2 a:HIS118 3.9 20.4 1.0 CG1 i:VAL8 3.9 25.7 1.0 C3D a:CLA408 4.2 23.7 1.0 C3B a:CLA408 4.2 23.7 1.0 C2B a:CLA408 4.2 23.7 1.0 C2D a:CLA408 4.3 23.7 1.0 C3A a:CLA408 4.3 23.7 1.0 C2C a:CLA408 4.3 23.7 1.0 C2A a:CLA408 4.3 23.7 1.0 C3C a:CLA408 4.3 23.7 1.0 CBA a:CLA408 4.6 23.7 1.0 ND1 a:HIS118 4.9 20.4 1.0 CBD a:CLA408 4.9 23.7 1.0 CG a:HIS118 5.0 20.4 1.0

Magnesium binding site 4 out of 224 in the Cryo-Em Structure of Cryptophyte Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Cryptophyte Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg412 b:19.6 occ:1.00 MG a:CLA412 0.0 19.6 1.0 NA a:CLA412 1.9 19.6 1.0 ND a:CLA412 1.9 19.6 1.0 NB a:CLA412 2.0 19.6 1.0 NC a:CLA412 2.0 19.6 1.0 C4A a:CLA412 2.9 19.6 1.0 C4D a:CLA412 2.9 19.6 1.0 C1C a:CLA412 3.0 19.6 1.0 C1A a:CLA412 3.0 19.6 1.0 C1B a:CLA412 3.0 19.6 1.0 C4B a:CLA412 3.1 19.6 1.0 C4C a:CLA412 3.1 19.6 1.0 C1D a:CLA412 3.2 19.6 1.0 CHB a:CLA412 3.3 19.6 1.0 CHC a:CLA412 3.4 19.6 1.0 CHA a:CLA412 3.4 19.6 1.0 CHD a:CLA412 3.5 19.6 1.0 CBB a:PHO407 4.0 19.1 1.0 C3D a:CLA412 4.2 19.6 1.0 C2C a:CLA412 4.2 19.6 1.0 C2B a:CLA412 4.2 19.6 1.0 C3B a:CLA412 4.2 19.6 1.0 C3A a:CLA412 4.3 19.6 1.0 C3C a:CLA412 4.3 19.6 1.0 C2A a:CLA412 4.3 19.6 1.0 C2D a:CLA412 4.3 19.6 1.0 O a:HOH519 4.3 50.0 1.0 CBA a:CLA412 4.4 19.6 1.0 CAA a:CLA412 4.8 19.6 1.0 CG2 a:THR179 4.9 19.4 1.0 CBD a:CLA412 4.9 19.6 1.0

Magnesium binding site 5 out of 224 in the Cryo-Em Structure of Cryptophyte Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Cryptophyte Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg405 b:19.5 occ:1.00 MG A:CLA405 0.0 19.5 1.0 NA A:CLA405 1.9 19.5 1.0 ND A:CLA405 1.9 19.5 1.0 NB A:CLA405 2.0 19.5 1.0 NC A:CLA405 2.0 19.5 1.0 C4D A:CLA405 2.9 19.5 1.0 C4A A:CLA405 2.9 19.5 1.0 NE2 A:HIS198 2.9 19.9 1.0 C1C A:CLA405 3.0 19.5 1.0 C1B A:CLA405 3.0 19.5 1.0 C1A A:CLA405 3.1 19.5 1.0 C4B A:CLA405 3.1 19.5 1.0 C4C A:CLA405 3.1 19.5 1.0 C1D A:CLA405 3.2 19.5 1.0 CHB A:CLA405 3.3 19.5 1.0 CHC A:CLA405 3.4 19.5 1.0 CHA A:CLA405 3.4 19.5 1.0 CHD A:CLA405 3.6 19.5 1.0 CE A:MET183 3.6 19.6 1.0 CE1 A:HIS198 3.8 19.9 1.0 CD2 A:HIS198 3.9 19.9 1.0 CAB D:CLA404 4.1 19.9 1.0 C3D A:CLA405 4.2 19.5 1.0 C2B A:CLA405 4.2 19.5 1.0 C3B A:CLA405 4.2 19.5 1.0 C3A A:CLA405 4.3 19.5 1.0 C2D A:CLA405 4.3 19.5 1.0 C2C A:CLA405 4.3 19.5 1.0 C3C A:CLA405 4.3 19.5 1.0 C2A A:CLA405 4.3 19.5 1.0 CHC D:CLA404 4.6 19.9 1.0 SD A:MET183 4.7 19.6 1.0 C3B D:CLA404 4.8 19.9 1.0 CBB D:CLA404 4.8 19.9 1.0 CBD A:CLA405 4.9 19.5 1.0 CAA A:CLA405 4.9 19.5 1.0 ND1 A:HIS198 5.0 19.9 1.0 C4B D:CLA404 5.0 19.9 1.0

Magnesium binding site 6 out of 224 in the Cryo-Em Structure of Cryptophyte Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Cryptophyte Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg406 b:20.6 occ:1.00 MG A:CLA406 0.0 20.6 1.0 NA A:CLA406 1.9 20.6 1.0 NB A:CLA406 1.9 20.6 1.0 ND A:CLA406 1.9 20.6 1.0 NC A:CLA406 2.0 20.6 1.0 C4D A:CLA406 2.9 20.6 1.0 C4A A:CLA406 2.9 20.6 1.0 O A:HOH518 3.0 50.0 1.0 C1C A:CLA406 3.0 20.6 1.0 C1B A:CLA406 3.0 20.6 1.0 C1A A:CLA406 3.0 20.6 1.0 C4B A:CLA406 3.1 20.6 1.0 C4C A:CLA406 3.1 20.6 1.0 C1D A:CLA406 3.2 20.6 1.0 CHB A:CLA406 3.3 20.6 1.0 CHC A:CLA406 3.4 20.6 1.0 CHA A:CLA406 3.4 20.6 1.0 CHD A:CLA406 3.6 20.6 1.0 CBB D:PHO403 3.6 21.0 1.0 C3D A:CLA406 4.2 20.6 1.0 C2B A:CLA406 4.2 20.6 1.0 C3B A:CLA406 4.2 20.6 1.0 C2C A:CLA406 4.3 20.6 1.0 C2D A:CLA406 4.3 20.6 1.0 C3A A:CLA406 4.3 20.6 1.0 C2A A:CLA406 4.3 20.6 1.0 C3C A:CLA406 4.3 20.6 1.0 CE2 A:PHE206 4.3 19.2 1.0 O A:HOH515 4.3 50.0 1.0 CBA A:CLA406 4.5 20.6 1.0 CD2 A:PHE206 4.8 19.2 1.0 CAB D:PHO403 4.8 21.0 1.0 CAA A:CLA406 4.9 20.6 1.0 CBD A:CLA406 4.9 20.6 1.0 C1 D:CLA404 4.9 19.9 1.0

Magnesium binding site 7 out of 224 in the Cryo-Em Structure of Cryptophyte Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of Cryptophyte Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg408 b:23.7 occ:1.00 MG A:CLA408 0.0 23.7 1.0 NA A:CLA408 1.9 23.7 1.0 ND A:CLA408 1.9 23.7 1.0 NB A:CLA408 2.0 23.7 1.0 NC A:CLA408 2.0 23.7 1.0 NE2 A:HIS118 2.9 20.4 1.0 C4D A:CLA408 2.9 23.7 1.0 C4A A:CLA408 2.9 23.7 1.0 C1C A:CLA408 3.0 23.7 1.0 C1A A:CLA408 3.0 23.7 1.0 C1B A:CLA408 3.0 23.7 1.0 C4B A:CLA408 3.1 23.7 1.0 C4C A:CLA408 3.1 23.7 1.0 C1D A:CLA408 3.2 23.7 1.0 CHB A:CLA408 3.3 23.7 1.0 CHA A:CLA408 3.4 23.7 1.0 CHC A:CLA408 3.4 23.7 1.0 CHD A:CLA408 3.5 23.7 1.0 CE1 A:HIS118 3.7 20.4 1.0 CG2 I:VAL12 3.8 24.2 1.0 CD2 A:HIS118 3.9 20.4 1.0 CG1 I:VAL8 3.9 25.7 1.0 C3D A:CLA408 4.2 23.7 1.0 C3B A:CLA408 4.2 23.7 1.0 C2B A:CLA408 4.2 23.7 1.0 C2D A:CLA408 4.3 23.7 1.0 C3A A:CLA408 4.3 23.7 1.0 C2C A:CLA408 4.3 23.7 1.0 C2A A:CLA408 4.3 23.7 1.0 C3C A:CLA408 4.3 23.7 1.0 CBA A:CLA408 4.6 23.7 1.0 ND1 A:HIS118 4.9 20.4 1.0 CBD A:CLA408 4.9 23.7 1.0 CG A:HIS118 5.0 20.4 1.0

Magnesium binding site 8 out of 224 in the Cryo-Em Structure of Cryptophyte Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of Cryptophyte Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg412 b:19.6 occ:1.00 MG A:CLA412 0.0 19.6 1.0 NA A:CLA412 1.9 19.6 1.0 ND A:CLA412 1.9 19.6 1.0 NB A:CLA412 2.0 19.6 1.0 NC A:CLA412 2.0 19.6 1.0 C4A A:CLA412 2.9 19.6 1.0 C4D A:CLA412 2.9 19.6 1.0 C1C A:CLA412 3.0 19.6 1.0 C1A A:CLA412 3.0 19.6 1.0 C1B A:CLA412 3.0 19.6 1.0 C4B A:CLA412 3.1 19.6 1.0 C4C A:CLA412 3.1 19.6 1.0 C1D A:CLA412 3.2 19.6 1.0 CHB A:CLA412 3.3 19.6 1.0 CHC A:CLA412 3.4 19.6 1.0 CHA A:CLA412 3.4 19.6 1.0 CHD A:CLA412 3.5 19.6 1.0 CBB A:PHO407 4.0 19.1 1.0 C3D A:CLA412 4.2 19.6 1.0 C2C A:CLA412 4.2 19.6 1.0 C2B A:CLA412 4.2 19.6 1.0 C3B A:CLA412 4.2 19.6 1.0 C3A A:CLA412 4.3 19.6 1.0 C3C A:CLA412 4.3 19.6 1.0 C2A A:CLA412 4.3 19.6 1.0 C2D A:CLA412 4.3 19.6 1.0 O A:HOH519 4.3 50.0 1.0 CBA A:CLA412 4.4 19.6 1.0 CAA A:CLA412 4.8 19.6 1.0 CG2 A:THR179 4.9 19.4 1.0 CBD A:CLA412 4.9 19.6 1.0

Magnesium binding site 9 out of 224 in the Cryo-Em Structure of Cryptophyte Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of Cryptophyte Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ 0:Mg301 b:64.4 occ:1.00 MG 0:CLA301 0.0 64.4 1.0 NA 0:CLA301 1.9 64.4 1.0 NB 0:CLA301 1.9 64.4 1.0 ND 0:CLA301 1.9 64.4 1.0 NC 0:CLA301 2.0 64.4 1.0 O 0:ALA46 2.7 64.7 1.0 C4D 0:CLA301 2.9 64.4 1.0 C4A 0:CLA301 2.9 64.4 1.0 C1C 0:CLA301 3.0 64.4 1.0 C1A 0:CLA301 3.0 64.4 1.0 C1B 0:CLA301 3.0 64.4 1.0 C4B 0:CLA301 3.0 64.4 1.0 C4C 0:CLA301 3.1 64.4 1.0 C1D 0:CLA301 3.2 64.4 1.0 CHB 0:CLA301 3.3 64.4 1.0 CHC 0:CLA301 3.4 64.4 1.0 CHA 0:CLA301 3.4 64.4 1.0 CHD 0:CLA301 3.5 64.4 1.0 C9 0:LHG317 3.6 67.2 1.0 C 0:ALA46 3.9 64.7 1.0 C11 0:LHG317 4.1 67.2 1.0 C3D 0:CLA301 4.2 64.4 1.0 C3B 0:CLA301 4.2 64.4 1.0 C2A 0:CLA301 4.2 64.4 1.0 C2B 0:CLA301 4.2 64.4 1.0 C2C 0:CLA301 4.2 64.4 1.0 C3A 0:CLA301 4.2 64.4 1.0 C2D 0:CLA301 4.3 64.4 1.0 C3C 0:CLA301 4.3 64.4 1.0 CA 0:ALA46 4.5 64.7 1.0 CAA 0:CLA301 4.6 64.4 1.0 C10 0:LHG317 4.6 67.2 1.0 C8 0:LHG317 4.6 67.2 1.0 CD 0:PRO48 4.7 62.5 1.0 CBD 0:CLA301 4.9 64.4 1.0 N 0:MET47 4.9 62.5 1.0

Magnesium binding site 10 out of 224 in the Cryo-Em Structure of Cryptophyte Photosystem II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of Cryptophyte Photosystem II within 5.0Å range: probe atom residue distance (Å) B Occ 0:Mg302 b:63.2 occ:1.00 MG 0:CLA302 0.0 63.2 1.0 NA 0:CLA302 1.9 63.2 1.0 NB 0:CLA302 1.9 63.2 1.0 ND 0:CLA302 1.9 63.2 1.0 NC 0:CLA302 2.0 63.2 1.0 OE2 0:GLU84 2.7 61.0 1.0 C4D 0:CLA302 2.9 63.2 1.0 C4A 0:CLA302 2.9 63.2 1.0 C1C 0:CLA302 3.0 63.2 1.0 C1A 0:CLA302 3.0 63.2 1.0 C1B 0:CLA302 3.0 63.2 1.0 C4B 0:CLA302 3.0 63.2 1.0 C20 0:II0314 3.1 65.4 1.0 C4C 0:CLA302 3.1 63.2 1.0 C1D 0:CLA302 3.2 63.2 1.0 CHB 0:CLA302 3.3 63.2 1.0 CHA 0:CLA302 3.4 63.2 1.0 CHC 0:CLA302 3.4 63.2 1.0 CHD 0:CLA302 3.5 63.2 1.0 CD 0:GLU84 3.8 61.0 1.0 C3D 0:CLA302 4.2 63.2 1.0 C2B 0:CLA302 4.2 63.2 1.0 C3B 0:CLA302 4.2 63.2 1.0 C2C 0:CLA302 4.3 63.2 1.0 C2D 0:CLA302 4.3 63.2 1.0 C3A 0:CLA302 4.3 63.2 1.0 CBA 0:CLA302 4.3 63.2 1.0 C2A 0:CLA302 4.3 63.2 1.0 C3C 0:CLA302 4.3 63.2 1.0 CG 0:GLU84 4.4 61.0 1.0 C14 0:II0314 4.4 65.4 1.0 O2A 0:CLA302 4.4 63.2 1.0 NE 0:ARG188 4.5 64.3 1.0 CGA 0:CLA302 4.8 63.2 1.0 OE1 0:GLU84 4.8 61.0 1.0 CAA 0:CLA302 4.8 63.2 1.0 NH2 0:ARG188 4.8 64.3 1.0 CBD 0:CLA302 4.9 63.2 1.0 C12 0:II0314 5.0 65.4 1.0 C4 0:CLA302 5.0 63.2 1.0

K.Li, L.S.Zhao, Y.Z.Zhang, L.N.Liu. Cryo-Em Structure of Cryptophyte Photosystem II To Be Published.