Magnesium in PDB 8xrg: The Crystal Structure of Asfvtopii Atpase Domain in Complex with Adp

All present enzymatic activity of The Crystal Structure of Asfvtopii Atpase Domain in Complex with Adp:
5.6.2.2;

The structure of The Crystal Structure of Asfvtopii Atpase Domain in Complex with Adp, PDB code: 8xrg was solved by J.Yang, J.H.Gan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.72 / 1.61
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	85.256, 85.256, 209.538, 90, 90, 120
R / Rfree (%)	18.6 / 20.6

The binding sites of Magnesium atom in the The Crystal Structure of Asfvtopii Atpase Domain in Complex with Adp (pdb code 8xrg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of Asfvtopii Atpase Domain in Complex with Adp, PDB code: 8xrg:

Magnesium binding site 1 out of 1 in the The Crystal Structure of Asfvtopii Atpase Domain in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Asfvtopii Atpase Domain in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg503 b:16.0 occ:1.00 O3 A:PO4502 1.9 18.5 1.0 O3B A:ADP501 2.0 17.4 1.0 O A:HOH619 2.1 16.3 1.0 O1A A:ADP501 2.1 14.7 1.0 OD1 A:ASN64 2.1 15.6 1.0 O A:HOH663 2.1 18.6 1.0 CG A:ASN64 3.1 15.9 1.0 PB A:ADP501 3.2 16.4 1.0 PA A:ADP501 3.3 16.8 1.0 P A:PO4502 3.4 19.3 1.0 ND2 A:ASN64 3.4 16.0 1.0 O3A A:ADP501 3.5 17.2 1.0 O2B A:ADP501 3.7 16.7 1.0 O2 A:PO4502 3.9 22.4 1.0 O A:HOH692 4.0 17.5 1.0 O A:HOH758 4.1 27.9 1.0 O5' A:ADP501 4.1 17.3 1.0 OE1 A:GLU60 4.1 22.5 1.0 CA A:GLY142 4.2 20.0 1.0 O4 A:PO4502 4.2 22.3 1.0 O1 A:PO4502 4.4 19.8 1.0 O A:GLU60 4.4 17.4 1.0 CB A:ASN64 4.4 16.1 1.0 O1B A:ADP501 4.5 19.2 1.0 CA A:GLY147 4.5 15.4 1.0 O2A A:ADP501 4.6 17.6 1.0 OD2 A:ASP67 4.6 21.4 1.0 CA A:ASN64 4.7 18.1 1.0 N A:GLY147 4.7 15.7 1.0 N A:ASN64 4.8 15.2 1.0 N A:LEU148 5.0 14.7 1.0 N A:GLY142 5.0 19.3 1.0

J.Yang, J.H.Gan. The Crystal Structure of Asfvtopii Atpase Domain in Complex with Adp Nat Commun 2024.
ISSN: ESSN 2041-1723