Magnesium in PDB 8y30: Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+

The structure of Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+, PDB code: 8y30 was solved by K.Cheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.00 / 2.80
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	199.313, 199.313, 62.764, 90, 90, 120
R / Rfree (%)	24.6 / 27.8

The binding sites of Magnesium atom in the Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+ (pdb code 8y30). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+, PDB code: 8y30:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:39.9 occ:1.00 OD1 A:ASP144 1.8 65.8 1.0 OD2 A:ASP228 1.9 59.6 1.0 NE2 A:HIS168 2.3 63.8 1.0 OD2 A:ASP91 2.3 58.2 1.0 CG A:ASP144 2.5 62.3 1.0 OD2 A:ASP144 2.7 64.5 1.0 CG A:ASP228 3.0 51.6 1.0 CG A:ASP91 3.1 53.1 1.0 CE1 A:HIS168 3.2 58.1 1.0 CD2 A:HIS168 3.2 58.0 1.0 CB A:ASP91 3.3 45.6 1.0 NE2 A:HIS169 3.3 72.4 1.0 MG A:MG802 3.4 62.7 1.0 CE1 A:HIS169 3.5 65.6 1.0 OD1 A:ASP228 3.7 63.0 1.0 CB A:ASP144 4.0 48.4 1.0 OD2 A:ASP89 4.1 70.8 1.0 CB A:ASP228 4.1 46.4 1.0 N A:GLY198 4.2 50.3 1.0 OD1 A:ASP91 4.3 56.6 1.0 ND1 A:HIS168 4.3 52.9 1.0 CD2 A:HIS169 4.4 66.7 1.0 CG A:HIS168 4.4 56.8 1.0 ND1 A:HIS169 4.6 67.0 1.0 CA A:ASP91 4.7 47.7 1.0 CA A:GLY198 4.7 52.0 1.0 CA A:ASP144 4.8 48.0 1.0

Magnesium binding site 2 out of 6 in the Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:62.7 occ:1.00 OD2 A:ASP89 1.7 70.8 1.0 OD2 A:ASP144 1.7 64.5 1.0 OD1 A:ASP87 2.1 74.1 1.0 CG A:ASP89 2.3 67.0 1.0 CB A:ASP89 2.5 54.5 1.0 CG A:ASP144 2.7 62.3 1.0 CG A:ASP87 2.9 60.6 1.0 OD2 A:ASP87 3.2 57.8 1.0 MG A:MG801 3.4 39.9 1.0 OD1 A:ASP89 3.4 65.7 1.0 OD1 A:ASP144 3.5 65.8 1.0 CB A:ASP144 3.6 48.4 1.0 CA A:ASP89 3.8 57.3 1.0 N A:GLY92 3.8 45.3 1.0 N A:ASP89 4.1 57.9 1.0 CB A:ASP91 4.1 45.6 1.0 OD2 A:ASP228 4.1 59.6 1.0 CB A:ASP87 4.2 58.1 1.0 NE2 A:HIS169 4.2 72.4 1.0 CA A:GLY92 4.4 47.6 1.0 C A:ASP89 4.5 60.6 1.0 O A:ASP144 4.5 61.9 1.0 C A:ASP91 4.6 47.5 1.0 N A:ASP91 4.7 45.0 1.0 CA A:ASP91 4.7 47.7 1.0 O A:ASP89 4.7 58.4 1.0 OD2 A:ASP91 4.9 58.2 1.0 CG A:ASP91 4.9 53.1 1.0 CE1 A:HIS169 4.9 65.6 1.0 CA A:ASP144 4.9 48.0 1.0

Magnesium binding site 3 out of 6 in the Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg801 b:42.4 occ:1.00 NE2 B:HIS168 1.8 58.0 1.0 OD2 B:ASP228 1.9 62.4 1.0 OD1 B:ASP144 2.0 46.6 1.0 OD2 B:ASP91 2.5 57.7 1.0 CE1 B:HIS168 2.7 52.2 1.0 CD2 B:HIS168 2.9 54.0 1.0 CG B:ASP144 2.9 52.9 1.0 NE2 B:HIS169 3.1 60.5 1.0 CG B:ASP228 3.1 62.7 1.0 CE1 B:HIS169 3.2 60.7 1.0 OD2 B:ASP144 3.3 51.6 1.0 CG B:ASP91 3.5 52.1 1.0 CB B:ASP91 3.7 46.8 1.0 ND1 B:HIS168 3.8 49.8 1.0 OD1 B:ASP228 3.9 60.5 1.0 CG B:HIS168 3.9 49.9 1.0 CD2 B:HIS169 4.2 55.5 1.0 OD2 B:ASP89 4.2 59.6 1.0 CB B:ASP228 4.2 54.5 1.0 N B:GLY198 4.3 49.5 1.0 ND1 B:HIS169 4.3 54.1 1.0 CB B:ASP144 4.3 47.4 1.0 MG B:MG802 4.4 60.1 1.0 OD1 B:ASP91 4.6 59.0 1.0 CG B:HIS169 4.8 57.8 1.0 CA B:GLY198 4.9 54.3 1.0 CA B:ASP144 5.0 46.4 1.0

Magnesium binding site 4 out of 6 in the Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:60.1 occ:1.00 OD2 B:ASP89 1.7 59.6 1.0 OD2 B:ASP144 1.7 51.6 1.0 OD2 B:ASP87 1.8 66.5 1.0 CG B:ASP89 2.1 51.3 1.0 OD1 B:ASP89 2.3 54.4 1.0 CG B:ASP87 2.7 56.3 1.0 CG B:ASP144 3.0 52.9 1.0 CB B:ASP87 3.0 50.4 1.0 CB B:ASP89 3.4 46.8 1.0 OD1 B:ASP87 3.8 60.1 1.0 OD1 B:ASP144 3.8 46.6 1.0 CB B:ASP144 3.9 47.4 1.0 CE1 B:HIS169 4.2 60.7 1.0 O B:ASP144 4.2 49.5 1.0 MG B:MG801 4.4 42.4 1.0 N B:ASP89 4.4 50.2 1.0 N B:GLY92 4.4 47.4 1.0 CA B:ASP87 4.5 52.4 1.0 CA B:ASP89 4.5 46.8 1.0 CE1 B:TYR122 4.7 61.8 1.0 CA B:GLY92 4.7 47.4 1.0 NE2 B:HIS169 4.8 60.5 1.0 C B:ASP87 4.9 49.7 1.0 CA B:ASP144 5.0 46.4 1.0 N B:TYR88 5.0 55.3 1.0

Magnesium binding site 5 out of 6 in the Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg801 b:61.3 occ:1.00 OD1 C:ASP144 1.6 79.2 1.0 OD2 C:ASP228 1.8 67.7 1.0 NE2 C:HIS168 2.0 70.2 1.0 OD2 C:ASP91 2.2 83.0 1.0 CG C:ASP144 2.7 83.4 1.0 CD2 C:HIS168 3.0 73.7 1.0 CE1 C:HIS168 3.0 75.2 1.0 CG C:ASP228 3.0 74.9 1.0 CG C:ASP91 3.2 77.5 1.0 OD2 C:ASP144 3.2 88.9 1.0 CB C:ASP91 3.6 66.8 1.0 CE1 C:HIS169 3.7 86.6 1.0 MG C:MG802 3.7 90.7 1.0 OD2 C:ASP89 3.8 81.6 1.0 OD1 C:ASP228 3.8 70.5 1.0 CB C:ASP144 3.9 80.1 1.0 N C:GLY198 4.0 64.9 1.0 CB C:ASP228 4.0 69.2 1.0 ND1 C:HIS168 4.1 68.4 1.0 CG C:HIS168 4.1 73.1 1.0 NE2 C:HIS169 4.1 91.3 1.0 OD1 C:ASP91 4.3 77.6 1.0 OD1 C:ASP89 4.5 88.0 1.0 ND1 C:HIS169 4.5 85.3 1.0 CA C:GLY198 4.5 68.4 1.0 CA C:ASP144 4.5 82.9 1.0 CG C:ASP89 4.6 82.3 1.0 CA C:ASP91 4.9 71.6 1.0 CB C:CYS197 4.9 68.0 1.0 C C:CYS197 5.0 70.2 1.0

Magnesium binding site 6 out of 6 in the Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Staphylococcus Aureus Recj Protein in Complex with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg802 b:90.7 occ:1.00 OD2 C:ASP144 1.4 88.9 1.0 OD1 C:ASP87 1.9 99.8 1.0 OD2 C:ASP89 2.1 81.6 1.0 OD1 C:ASP89 2.1 88.0 1.0 CG C:ASP89 2.2 82.3 1.0 CG C:ASP144 2.2 83.4 1.0 CG C:ASP87 2.5 89.4 1.0 OD2 C:ASP87 2.7 90.1 1.0 OD1 C:ASP144 3.0 79.2 1.0 CB C:ASP144 3.1 80.1 1.0 CB C:ASP89 3.4 72.6 1.0 N C:GLY92 3.5 77.9 1.0 MG C:MG801 3.7 61.3 1.0 CB C:ASP87 3.8 85.0 1.0 CA C:GLY92 3.8 71.9 1.0 CA C:ASP89 4.3 74.9 1.0 O C:ASP144 4.3 90.4 1.0 OD2 C:ASP228 4.3 67.7 1.0 N C:ASP89 4.3 78.2 1.0 CB C:ASP91 4.4 66.8 1.0 C C:ASP91 4.4 75.6 1.0 OD2 C:ASP91 4.5 83.0 1.0 CA C:ASP144 4.5 82.9 1.0 O C:ASP89 4.5 79.3 1.0 C C:ASP89 4.6 77.3 1.0 CA C:ASP87 4.7 89.2 1.0 OD1 C:ASP228 4.8 70.5 1.0 CA C:ASP91 4.8 71.6 1.0 C C:ASP87 4.9 83.6 1.0 C C:ASP144 4.9 89.3 1.0 N C:ASP87 4.9 85.6 1.0 CG C:ASP91 4.9 77.5 1.0 NE2 C:HIS169 5.0 91.3 1.0

K.Cheng, Y.Wang. Structure of Staphylococcus Aureus Recj To Be Published.