Magnesium in PDB 8y7z: Cryo-Em Structure of the Monomeric Sparsa Grna-Ssdna Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of the Monomeric Sparsa Grna-Ssdna Complex (pdb code 8y7z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of the Monomeric Sparsa Grna-Ssdna Complex, PDB code: 8y7z:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of the Monomeric Sparsa Grna-Ssdna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Monomeric Sparsa Grna-Ssdna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:0.9 occ:1.00 OP1 C:A1 2.0 2.0 1.0 ND2 B:ASN434 2.1 6.8 1.0 OP1 C:U3 2.2 2.5 1.0 P C:A1 2.8 5.2 1.0 C B:MET473 3.0 7.3 1.0 CG B:ASN434 3.3 2.9 1.0 O B:MET473 3.3 13.4 1.0 OE1 B:GLN181 3.3 8.9 1.0 P C:U3 3.5 0.6 1.0 O3' C:U2 3.6 1.8 1.0 OD1 B:ASN434 3.7 3.0 1.0 NZ B:LYS207 3.8 4.8 1.0 OP2 C:A1 3.9 5.8 1.0 O5' C:A1 4.0 9.6 1.0 CD B:GLN181 4.1 9.5 1.0 NE2 B:GLN181 4.1 5.2 1.0 C5' C:A1 4.2 6.9 1.0 O5' C:U3 4.3 7.8 1.0 CA B:MET473 4.4 8.1 1.0 CB B:ASN434 4.5 3.2 1.0 OP2 C:U3 4.6 7.9 1.0 CB B:ALA203 4.7 3.9 1.0 CE B:LYS207 4.8 0.0 1.0 O2' C:U2 4.9 9.9 1.0 C3' C:U2 4.9 9.7 1.0 CB B:MET473 4.9 12.3 1.0

N.Cui, J.T.Zhang, Z.Li, X.Y.Wei, J.Wang, N.Jia. Tetramerization-Dependent Activation of the SIR2-Associated Short Prokaryotic Argonaute Immune System. Nat Commun V. 15 8610 2024.
ISSN: ESSN 2041-1723
PubMed: 39366953
DOI: 10.1038/S41467-024-52910-5