Magnesium in PDB 8yhh: The Crystal Structure of Mitotic Kinesin EG5 From Biortus

The structure of The Crystal Structure of Mitotic Kinesin EG5 From Biortus, PDB code: 8yhh was solved by F.Wang, W.Cheng, Z.Lv, J.Qi, B.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.59 / 1.95
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	51.654, 78.254, 93.467, 90, 94.51, 90
R / Rfree (%)	21.4 / 26.1

The binding sites of Magnesium atom in the The Crystal Structure of Mitotic Kinesin EG5 From Biortus (pdb code 8yhh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of Mitotic Kinesin EG5 From Biortus, PDB code: 8yhh:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Crystal Structure of Mitotic Kinesin EG5 From Biortus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Mitotic Kinesin EG5 From Biortus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:19.9 occ:1.00 O A:HOH510 2.0 21.0 1.0 O A:HOH594 2.0 17.5 1.0 O A:HOH545 2.0 19.5 1.0 OG1 A:THR112 2.0 21.4 1.0 O A:HOH582 2.0 19.9 1.0 O2B A:ADP401 2.1 20.9 1.0 CB A:THR112 3.1 21.7 1.0 PB A:ADP401 3.3 23.4 1.0 O1B A:ADP401 3.5 22.9 1.0 N A:THR112 3.9 21.0 1.0 O A:HOH511 4.0 35.2 1.0 OD2 A:ASP265 4.1 25.1 1.0 CA A:THR112 4.1 21.8 1.0 CG2 A:THR112 4.2 21.7 1.0 O A:HOH682 4.2 35.3 1.0 OD1 A:ASP265 4.2 24.1 1.0 O A:HOH534 4.2 21.1 1.0 O2A A:ADP401 4.3 24.6 1.0 O A:HOH676 4.3 46.8 1.0 O3B A:ADP401 4.3 22.2 1.0 O3A A:ADP401 4.4 23.5 1.0 O B:HOH505 4.5 30.9 1.0 O A:HOH567 4.5 24.4 1.0 CG A:ASP265 4.6 25.3 1.0 PA A:ADP401 4.6 24.9 1.0 O1A A:ADP401 4.7 25.6 1.0 CB A:LYS111 4.8 21.8 1.0 O A:HOH604 4.9 21.4 1.0 CE A:LYS111 4.9 22.2 1.0 O B:HOH625 4.9 46.1 1.0

Magnesium binding site 2 out of 2 in the The Crystal Structure of Mitotic Kinesin EG5 From Biortus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of Mitotic Kinesin EG5 From Biortus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:24.7 occ:1.00 O B:HOH522 2.0 23.4 1.0 OG1 B:THR112 2.0 26.8 1.0 O B:HOH550 2.0 22.7 1.0 O B:HOH559 2.0 27.8 1.0 O B:HOH554 2.0 24.8 1.0 O2B B:ADP401 2.1 23.3 1.0 CB B:THR112 3.1 25.7 1.0 PB B:ADP401 3.3 24.1 1.0 O1B B:ADP401 3.4 23.1 1.0 N B:THR112 3.9 26.1 1.0 CA B:THR112 4.1 25.9 1.0 CG2 B:THR112 4.1 25.8 1.0 O2A B:ADP401 4.1 29.1 1.0 OD2 B:ASP265 4.1 28.4 1.0 O B:HOH551 4.2 29.2 1.0 O B:HOH574 4.2 43.0 1.0 O B:HOH616 4.2 38.1 1.0 O3A B:ADP401 4.2 25.0 1.0 OD1 B:ASP265 4.3 27.5 1.0 O3B B:ADP401 4.4 24.0 1.0 PA B:ADP401 4.5 27.9 1.0 O1A B:ADP401 4.5 29.1 1.0 O B:HOH533 4.6 29.0 1.0 OG B:SER232 4.6 37.8 1.0 O B:HOH556 4.6 26.0 1.0 CG B:ASP265 4.7 27.7 1.0 CB B:LYS111 4.8 23.4 1.0

F.Wang, W.Cheng, Z.Lv, J.Qi, B.Wu. The Crystal Structure of Mitotic Kinesin EG5 From Biortus To Be Published.