Magnesium in PDB 8ylu: Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna

All present enzymatic activity of Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna:
5.6.2.2;

The binding sites of Magnesium atom in the Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna (pdb code 8ylu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna, PDB code: 8ylu:

Magnesium binding site 1 out of 1 in the Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg701 b:30.0 occ:1.00 O D:GLU415 3.0 64.7 1.0 OD1 D:ASP486 3.2 53.6 1.0 OD2 D:ASP486 3.4 52.3 1.0 OH B:TYR117 3.5 46.6 1.0 OP1 F:DA10 3.6 52.1 1.0 CB D:ALA419 3.6 41.9 1.0 CG D:ASP486 3.7 53.6 1.0 O5' F:DA10 3.9 41.0 1.0 CZ B:TYR117 3.9 34.0 1.0 CE1 B:TYR117 4.1 30.2 1.0 C5' F:DA10 4.1 38.0 1.0 C D:GLU415 4.2 54.6 1.0 N D:ALA419 4.2 43.0 1.0 P F:DA10 4.4 50.9 1.0 CA D:ALA419 4.4 44.5 1.0 N D:LEU558 4.5 42.0 1.0 CA D:GLY557 4.6 36.1 1.0 CA D:GLY416 4.6 41.0 1.0 CE2 B:TYR117 4.8 27.8 1.0 N D:GLY416 4.8 41.8 1.0 CB D:SER418 4.9 40.6 1.0 C D:SER418 4.9 37.6 1.0 C4' F:DA10 5.0 31.7 1.0 OP1 F:DT11 5.0 43.0 1.0

Y.T.Chen, Y.H.Xin. Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna To Be Published.