Magnesium in PDB 8yo7: Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna and M-Amsa

All present enzymatic activity of Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna and M-Amsa:
5.6.2.2;

The binding sites of Magnesium atom in the Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna and M-Amsa (pdb code 8yo7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna and M-Amsa, PDB code: 8yo7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna and M-Amsa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna and M-Amsa within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg701 b:30.0 occ:1.00 OD2 C:ASP488 2.1 24.5 1.0 CG C:ASP488 3.4 30.0 1.0 OP1 Y:DT9 3.6 51.8 1.0 C5' Y:DT9 4.0 45.5 1.0 OD2 C:ASP486 4.0 58.2 1.0 CB C:ASP488 4.2 28.7 1.0 O C:LYS556 4.2 53.7 1.0 OD1 C:ASP488 4.3 32.0 1.0 O B:HIS74 4.5 53.2 1.0 OE2 C:GLU415 4.5 53.2 1.0 O5' Y:DT9 4.5 37.3 1.0 P Y:DT9 4.7 32.7 1.0 CE C:LYS556 4.8 53.8 1.0 CG C:ASP486 4.8 57.0 1.0

Magnesium binding site 2 out of 2 in the Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna and M-Amsa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna and M-Amsa within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg701 b:30.0 occ:1.00 OD1 D:ASP488 2.3 44.7 1.0 OP1 X:DT9 3.5 43.3 1.0 CG D:ASP488 3.5 51.3 1.0 OD2 D:ASP486 3.7 52.2 1.0 O A:HIS74 3.9 34.0 1.0 C5' X:DT9 4.3 48.3 1.0 OD2 D:ASP488 4.3 48.5 1.0 CB D:ASP488 4.4 53.0 1.0 CG D:ASP486 4.6 57.3 1.0 O5' X:DT9 4.7 38.0 1.0 P X:DT9 4.7 11.6 1.0 O D:LYS556 4.7 49.1 1.0 CB D:ASP486 4.8 56.5 1.0

Y.T.Chen, Y.H.Xin, R.Q.Xian. Structure of Phage T6 Topoisomerase II Central Domain Bound with Dna and M-Amsa To Be Published.