Magnesium in PDB 8ywi: The Structure of Asfv Dna Polymerase in Replicating State

All present enzymatic activity of The Structure of Asfv Dna Polymerase in Replicating State:
2.7.7.7;

The binding sites of Magnesium atom in the The Structure of Asfv Dna Polymerase in Replicating State (pdb code 8ywi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Structure of Asfv Dna Polymerase in Replicating State, PDB code: 8ywi:

Magnesium binding site 1 out of 1 in the The Structure of Asfv Dna Polymerase in Replicating State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Asfv Dna Polymerase in Replicating State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1301 b:51.0 occ:1.00 OD2 A:ASP517 2.2 54.5 1.0 O A:PHE518 2.3 53.6 1.0 O3G T:TTP1101 2.4 54.0 1.0 O1A T:TTP1101 2.5 54.0 1.0 OD2 A:ASP689 2.6 54.5 1.0 CG A:ASP517 3.0 54.5 1.0 O1B T:TTP1101 3.2 54.0 1.0 CB A:ASP517 3.4 54.5 1.0 C A:PHE518 3.5 53.6 1.0 PA T:TTP1101 3.6 54.0 1.0 O3A T:TTP1101 3.7 54.0 1.0 PG T:TTP1101 3.7 54.0 1.0 CG A:ASP689 3.8 54.5 1.0 OD1 A:ASP517 3.9 54.5 1.0 PB T:TTP1101 4.0 54.0 1.0 O2G T:TTP1101 4.1 54.0 1.0 N A:PHE518 4.1 53.6 1.0 O3B T:TTP1101 4.2 54.0 1.0 C A:ASP517 4.2 54.5 1.0 CA A:PHE518 4.4 53.6 1.0 OD1 A:ASP689 4.5 54.5 1.0 CA A:ASP517 4.5 54.5 1.0 N A:ALA519 4.5 54.1 1.0 O2A T:TTP1101 4.5 54.0 1.0 CA A:ALA519 4.6 54.1 1.0 O A:ASP517 4.7 54.5 1.0 CB A:ASP689 4.8 54.5 1.0 O5' T:TTP1101 4.8 54.0 1.0 O1G T:TTP1101 4.9 54.0 1.0

L.Kuai, J.Sun, Q.Peng, X.Zhao, B.Yuan, S.Liu, Y.Bi, Y.Shi. Cryo-Em Structure of Dna Polymerase of African Swine Fever Virus. Nucleic Acids Res. V. 52 10717 2024.
ISSN: ESSN 1362-4962
PubMed: 39189451
DOI: 10.1093/NAR/GKAE739