Magnesium in PDB 8z11: Cryo-Em Structure of Haptophyte Photosystem I
Enzymatic activity of Cryo-Em Structure of Haptophyte Photosystem I
All present enzymatic activity of Cryo-Em Structure of Haptophyte Photosystem I:
1.97.1.12;
Other elements in 8z11:
The structure of Cryo-Em Structure of Haptophyte Photosystem I also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
160;
Page 17, Binding sites: 161 -
170;
Page 18, Binding sites: 171 -
180;
Page 19, Binding sites: 181 -
190;
Page 20, Binding sites: 191 -
200;
Page 21, Binding sites: 201 -
210;
Page 22, Binding sites: 211 -
220;
Page 23, Binding sites: 221 -
230;
Page 24, Binding sites: 231 -
240;
Page 25, Binding sites: 241 -
250;
Page 26, Binding sites: 251 -
260;
Page 27, Binding sites: 261 -
270;
Page 28, Binding sites: 271 -
280;
Page 29, Binding sites: 281 -
290;
Page 30, Binding sites: 291 -
300;
Page 31, Binding sites: 301 -
310;
Page 32, Binding sites: 311 -
320;
Page 33, Binding sites: 321 -
330;
Page 34, Binding sites: 331 -
340;
Page 35, Binding sites: 341 -
342;
Binding sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of Haptophyte Photosystem I
(pdb code 8z11). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 342 binding sites of Magnesium where determined in the
Cryo-Em Structure of Haptophyte Photosystem I, PDB code: 8z11:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 342 in 8z11
Go back to
Magnesium Binding Sites List in 8z11
Magnesium binding site 1 out
of 342 in the Cryo-Em Structure of Haptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg301
b:23.9
occ:1.00
|
MG
|
A:CLA301
|
0.0
|
23.9
|
1.0
|
NA
|
A:CLA301
|
1.9
|
23.9
|
1.0
|
ND
|
A:CLA301
|
1.9
|
23.9
|
1.0
|
NB
|
A:CLA301
|
1.9
|
23.9
|
1.0
|
NC
|
A:CLA301
|
2.0
|
23.9
|
1.0
|
O
|
A:ALA36
|
2.7
|
24.2
|
1.0
|
C4D
|
A:CLA301
|
2.9
|
23.9
|
1.0
|
C4A
|
A:CLA301
|
2.9
|
23.9
|
1.0
|
C1C
|
A:CLA301
|
3.0
|
23.9
|
1.0
|
C1B
|
A:CLA301
|
3.0
|
23.9
|
1.0
|
C1A
|
A:CLA301
|
3.0
|
23.9
|
1.0
|
C4B
|
A:CLA301
|
3.1
|
23.9
|
1.0
|
C4C
|
A:CLA301
|
3.1
|
23.9
|
1.0
|
C1D
|
A:CLA301
|
3.2
|
23.9
|
1.0
|
CHB
|
A:CLA301
|
3.3
|
23.9
|
1.0
|
CHC
|
A:CLA301
|
3.4
|
23.9
|
1.0
|
CHA
|
A:CLA301
|
3.4
|
23.9
|
1.0
|
CHD
|
A:CLA301
|
3.6
|
23.9
|
1.0
|
C
|
A:ALA36
|
3.9
|
24.2
|
1.0
|
C3D
|
A:CLA301
|
4.2
|
23.9
|
1.0
|
C2B
|
A:CLA301
|
4.2
|
23.9
|
1.0
|
C3B
|
A:CLA301
|
4.2
|
23.9
|
1.0
|
C2D
|
A:CLA301
|
4.3
|
23.9
|
1.0
|
C2C
|
A:CLA301
|
4.3
|
23.9
|
1.0
|
C3A
|
A:CLA301
|
4.3
|
23.9
|
1.0
|
C2A
|
A:CLA301
|
4.3
|
23.9
|
1.0
|
C3C
|
A:CLA301
|
4.3
|
23.9
|
1.0
|
C14
|
D:LMG303
|
4.4
|
39.3
|
1.0
|
CA
|
A:ALA36
|
4.5
|
24.2
|
1.0
|
C12
|
D:LMG303
|
4.6
|
39.3
|
1.0
|
O9
|
D:LMG303
|
4.9
|
39.3
|
1.0
|
N
|
A:VAL37
|
4.9
|
25.4
|
1.0
|
CBD
|
A:CLA301
|
4.9
|
23.9
|
1.0
|
CD
|
A:PRO38
|
5.0
|
24.6
|
1.0
|
CAA
|
A:CLA301
|
5.0
|
23.9
|
1.0
|
|
Magnesium binding site 2 out
of 342 in 8z11
Go back to
Magnesium Binding Sites List in 8z11
Magnesium binding site 2 out
of 342 in the Cryo-Em Structure of Haptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg302
b:26.8
occ:1.00
|
MG
|
A:CLA302
|
0.0
|
26.8
|
1.0
|
NA
|
A:CLA302
|
1.9
|
26.8
|
1.0
|
ND
|
A:CLA302
|
1.9
|
26.8
|
1.0
|
NB
|
A:CLA302
|
1.9
|
26.8
|
1.0
|
NC
|
A:CLA302
|
2.0
|
26.8
|
1.0
|
O10
|
W:LHG319
|
2.7
|
30.8
|
1.0
|
C4D
|
A:CLA302
|
2.9
|
26.8
|
1.0
|
C4A
|
A:CLA302
|
2.9
|
26.8
|
1.0
|
C1C
|
A:CLA302
|
3.0
|
26.8
|
1.0
|
C1B
|
A:CLA302
|
3.0
|
26.8
|
1.0
|
C1A
|
A:CLA302
|
3.1
|
26.8
|
1.0
|
C4B
|
A:CLA302
|
3.1
|
26.8
|
1.0
|
C4C
|
A:CLA302
|
3.1
|
26.8
|
1.0
|
C1D
|
A:CLA302
|
3.2
|
26.8
|
1.0
|
CHB
|
A:CLA302
|
3.3
|
26.8
|
1.0
|
CHA
|
A:CLA302
|
3.4
|
26.8
|
1.0
|
CHC
|
A:CLA302
|
3.4
|
26.8
|
1.0
|
C23
|
W:LHG319
|
3.5
|
30.8
|
1.0
|
CHD
|
A:CLA302
|
3.6
|
26.8
|
1.0
|
C6
|
W:LHG319
|
3.9
|
30.8
|
1.0
|
C3D
|
A:CLA302
|
4.2
|
26.8
|
1.0
|
C2B
|
A:CLA302
|
4.2
|
26.8
|
1.0
|
C3B
|
A:CLA302
|
4.2
|
26.8
|
1.0
|
O8
|
W:LHG319
|
4.2
|
30.8
|
1.0
|
C2D
|
A:CLA302
|
4.3
|
26.8
|
1.0
|
C2C
|
A:CLA302
|
4.3
|
26.8
|
1.0
|
C3A
|
A:CLA302
|
4.3
|
26.8
|
1.0
|
C3C
|
A:CLA302
|
4.3
|
26.8
|
1.0
|
C2A
|
A:CLA302
|
4.3
|
26.8
|
1.0
|
C24
|
W:LHG319
|
4.5
|
30.8
|
1.0
|
CMD
|
A:CLA303
|
4.5
|
27.2
|
1.0
|
NZ
|
A:LYS177
|
4.7
|
23.6
|
1.0
|
C5
|
W:LHG319
|
4.9
|
30.8
|
1.0
|
CBD
|
A:CLA302
|
4.9
|
26.8
|
1.0
|
CBA
|
A:CLA302
|
4.9
|
26.8
|
1.0
|
C25
|
W:LHG319
|
5.0
|
30.8
|
1.0
|
|
Magnesium binding site 3 out
of 342 in 8z11
Go back to
Magnesium Binding Sites List in 8z11
Magnesium binding site 3 out
of 342 in the Cryo-Em Structure of Haptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg303
b:27.2
occ:1.00
|
MG
|
A:CLA303
|
0.0
|
27.2
|
1.0
|
ND
|
A:CLA303
|
1.9
|
27.2
|
1.0
|
NA
|
A:CLA303
|
1.9
|
27.2
|
1.0
|
NB
|
A:CLA303
|
2.0
|
27.2
|
1.0
|
NC
|
A:CLA303
|
2.0
|
27.2
|
1.0
|
OD1
|
A:ASN178
|
2.6
|
22.3
|
1.0
|
C4D
|
A:CLA303
|
2.9
|
27.2
|
1.0
|
C4A
|
A:CLA303
|
2.9
|
27.2
|
1.0
|
C1B
|
A:CLA303
|
3.0
|
27.2
|
1.0
|
C1C
|
A:CLA303
|
3.0
|
27.2
|
1.0
|
C4B
|
A:CLA303
|
3.1
|
27.2
|
1.0
|
C1A
|
A:CLA303
|
3.1
|
27.2
|
1.0
|
C4C
|
A:CLA303
|
3.1
|
27.2
|
1.0
|
C1D
|
A:CLA303
|
3.2
|
27.2
|
1.0
|
CHB
|
A:CLA303
|
3.3
|
27.2
|
1.0
|
CHC
|
A:CLA303
|
3.4
|
27.2
|
1.0
|
CHA
|
A:CLA303
|
3.4
|
27.2
|
1.0
|
CHD
|
A:CLA303
|
3.5
|
27.2
|
1.0
|
CG
|
A:ASN178
|
3.7
|
22.3
|
1.0
|
C10
|
A:CLA302
|
3.8
|
26.8
|
1.0
|
C3D
|
A:CLA303
|
4.2
|
27.2
|
1.0
|
C8
|
A:CLA302
|
4.2
|
26.8
|
1.0
|
C2B
|
A:CLA303
|
4.2
|
27.2
|
1.0
|
C3B
|
A:CLA303
|
4.2
|
27.2
|
1.0
|
ND2
|
A:ASN178
|
4.3
|
22.3
|
1.0
|
C9
|
A:CLA302
|
4.3
|
26.8
|
1.0
|
C2D
|
A:CLA303
|
4.3
|
27.2
|
1.0
|
C3A
|
A:CLA303
|
4.3
|
27.2
|
1.0
|
C2C
|
A:CLA303
|
4.3
|
27.2
|
1.0
|
C3C
|
A:CLA303
|
4.3
|
27.2
|
1.0
|
C2A
|
A:CLA303
|
4.4
|
27.2
|
1.0
|
C7
|
A:DD6312
|
4.6
|
25.8
|
1.0
|
C11
|
A:CLA302
|
4.7
|
26.8
|
1.0
|
CBD
|
A:CLA303
|
4.9
|
27.2
|
1.0
|
C12
|
A:CLA302
|
5.0
|
26.8
|
1.0
|
CB
|
A:ASN178
|
5.0
|
22.3
|
1.0
|
|
Magnesium binding site 4 out
of 342 in 8z11
Go back to
Magnesium Binding Sites List in 8z11
Magnesium binding site 4 out
of 342 in the Cryo-Em Structure of Haptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg304
b:27.1
occ:1.00
|
MG
|
A:CLA304
|
0.0
|
27.1
|
1.0
|
NA
|
A:CLA304
|
1.9
|
27.1
|
1.0
|
ND
|
A:CLA304
|
1.9
|
27.1
|
1.0
|
NB
|
A:CLA304
|
1.9
|
27.1
|
1.0
|
NC
|
A:CLA304
|
2.0
|
27.1
|
1.0
|
C4D
|
A:CLA304
|
2.9
|
27.1
|
1.0
|
C4A
|
A:CLA304
|
2.9
|
27.1
|
1.0
|
C1B
|
A:CLA304
|
3.0
|
27.1
|
1.0
|
C1C
|
A:CLA304
|
3.0
|
27.1
|
1.0
|
C1A
|
A:CLA304
|
3.0
|
27.1
|
1.0
|
OE2
|
A:GLU175
|
3.1
|
23.4
|
1.0
|
C4B
|
A:CLA304
|
3.1
|
27.1
|
1.0
|
C4C
|
A:CLA304
|
3.1
|
27.1
|
1.0
|
C1D
|
A:CLA304
|
3.2
|
27.1
|
1.0
|
CHB
|
A:CLA304
|
3.3
|
27.1
|
1.0
|
C37
|
A:DD6312
|
3.4
|
25.8
|
1.0
|
CHC
|
A:CLA304
|
3.4
|
27.1
|
1.0
|
CHA
|
A:CLA304
|
3.4
|
27.1
|
1.0
|
CHD
|
A:CLA304
|
3.5
|
27.1
|
1.0
|
O1A
|
A:CLA304
|
3.5
|
27.1
|
1.0
|
CD
|
A:GLU175
|
3.8
|
23.4
|
1.0
|
C3D
|
A:CLA304
|
4.2
|
27.1
|
1.0
|
C2B
|
A:CLA304
|
4.2
|
27.1
|
1.0
|
C3B
|
A:CLA304
|
4.2
|
27.1
|
1.0
|
C2D
|
A:CLA304
|
4.3
|
27.1
|
1.0
|
C3A
|
A:CLA304
|
4.3
|
27.1
|
1.0
|
C2C
|
A:CLA304
|
4.3
|
27.1
|
1.0
|
CG
|
A:GLU175
|
4.3
|
23.4
|
1.0
|
C3C
|
A:CLA304
|
4.3
|
27.1
|
1.0
|
C2A
|
A:CLA304
|
4.3
|
27.1
|
1.0
|
CGA
|
A:CLA304
|
4.5
|
27.1
|
1.0
|
C36
|
A:DD6312
|
4.5
|
25.8
|
1.0
|
OE1
|
A:GLU175
|
4.7
|
23.4
|
1.0
|
NE
|
A:ARG80
|
4.8
|
25.7
|
1.0
|
CBD
|
A:CLA304
|
4.9
|
27.1
|
1.0
|
C1
|
A:CLA304
|
5.0
|
27.1
|
1.0
|
|
Magnesium binding site 5 out
of 342 in 8z11
Go back to
Magnesium Binding Sites List in 8z11
Magnesium binding site 5 out
of 342 in the Cryo-Em Structure of Haptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg305
b:32.8
occ:1.00
|
MG
|
A:CLA305
|
0.0
|
32.8
|
1.0
|
NA
|
A:CLA305
|
1.9
|
32.8
|
1.0
|
ND
|
A:CLA305
|
1.9
|
32.8
|
1.0
|
NB
|
A:CLA305
|
1.9
|
32.8
|
1.0
|
NC
|
A:CLA305
|
2.0
|
32.8
|
1.0
|
OE1
|
A:GLU130
|
2.6
|
35.6
|
1.0
|
C4D
|
A:CLA305
|
2.9
|
32.8
|
1.0
|
C4A
|
A:CLA305
|
2.9
|
32.8
|
1.0
|
C1C
|
A:CLA305
|
3.0
|
32.8
|
1.0
|
C1A
|
A:CLA305
|
3.0
|
32.8
|
1.0
|
C1B
|
A:CLA305
|
3.0
|
32.8
|
1.0
|
C4B
|
A:CLA305
|
3.1
|
32.8
|
1.0
|
C4C
|
A:CLA305
|
3.1
|
32.8
|
1.0
|
C1D
|
A:CLA305
|
3.2
|
32.8
|
1.0
|
CHB
|
A:CLA305
|
3.3
|
32.8
|
1.0
|
CHA
|
A:CLA305
|
3.4
|
32.8
|
1.0
|
CHC
|
A:CLA305
|
3.4
|
32.8
|
1.0
|
CHD
|
A:CLA305
|
3.5
|
32.8
|
1.0
|
CD
|
A:GLU130
|
3.8
|
35.6
|
1.0
|
C3D
|
A:CLA305
|
4.2
|
32.8
|
1.0
|
C3B
|
A:CLA305
|
4.2
|
32.8
|
1.0
|
C2B
|
A:CLA305
|
4.2
|
32.8
|
1.0
|
CG
|
A:GLU130
|
4.3
|
35.6
|
1.0
|
C2D
|
A:CLA305
|
4.3
|
32.8
|
1.0
|
C3A
|
A:CLA305
|
4.3
|
32.8
|
1.0
|
C2C
|
A:CLA305
|
4.3
|
32.8
|
1.0
|
C2A
|
A:CLA305
|
4.3
|
32.8
|
1.0
|
C3C
|
A:CLA305
|
4.3
|
32.8
|
1.0
|
CMD
|
A:CLA306
|
4.3
|
32.0
|
1.0
|
CBA
|
A:CLA305
|
4.4
|
32.8
|
1.0
|
CB
|
A:GLU130
|
4.8
|
35.6
|
1.0
|
OE2
|
A:GLU130
|
4.8
|
35.6
|
1.0
|
CAA
|
A:CLA305
|
4.9
|
32.8
|
1.0
|
CBD
|
A:CLA305
|
4.9
|
32.8
|
1.0
|
|
Magnesium binding site 6 out
of 342 in 8z11
Go back to
Magnesium Binding Sites List in 8z11
Magnesium binding site 6 out
of 342 in the Cryo-Em Structure of Haptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg306
b:32.0
occ:1.00
|
MG
|
A:CLA306
|
0.0
|
32.0
|
1.0
|
NB
|
A:CLA306
|
1.9
|
32.0
|
1.0
|
ND
|
A:CLA306
|
1.9
|
32.0
|
1.0
|
NA
|
A:CLA306
|
1.9
|
32.0
|
1.0
|
NC
|
A:CLA306
|
2.0
|
32.0
|
1.0
|
NE2
|
A:HIS78
|
2.7
|
25.6
|
1.0
|
C4D
|
A:CLA306
|
2.9
|
32.0
|
1.0
|
C4A
|
A:CLA306
|
2.9
|
32.0
|
1.0
|
C1B
|
A:CLA306
|
3.0
|
32.0
|
1.0
|
C1C
|
A:CLA306
|
3.0
|
32.0
|
1.0
|
C4B
|
A:CLA306
|
3.0
|
32.0
|
1.0
|
C1A
|
A:CLA306
|
3.1
|
32.0
|
1.0
|
C4C
|
A:CLA306
|
3.1
|
32.0
|
1.0
|
C1D
|
A:CLA306
|
3.2
|
32.0
|
1.0
|
CHB
|
A:CLA306
|
3.3
|
32.0
|
1.0
|
CHC
|
A:CLA306
|
3.4
|
32.0
|
1.0
|
CHA
|
A:CLA306
|
3.4
|
32.0
|
1.0
|
CHD
|
A:CLA306
|
3.6
|
32.0
|
1.0
|
CE1
|
A:HIS78
|
3.6
|
25.6
|
1.0
|
CD2
|
A:HIS78
|
3.6
|
25.6
|
1.0
|
C8
|
A:CLA305
|
4.0
|
32.8
|
1.0
|
C9
|
A:CLA305
|
4.1
|
32.8
|
1.0
|
C3D
|
A:CLA306
|
4.2
|
32.0
|
1.0
|
C2B
|
A:CLA306
|
4.2
|
32.0
|
1.0
|
C3B
|
A:CLA306
|
4.2
|
32.0
|
1.0
|
C2D
|
A:CLA306
|
4.3
|
32.0
|
1.0
|
C10
|
A:CLA305
|
4.3
|
32.8
|
1.0
|
C2C
|
A:CLA306
|
4.3
|
32.0
|
1.0
|
C3A
|
A:CLA306
|
4.3
|
32.0
|
1.0
|
C3C
|
A:CLA306
|
4.3
|
32.0
|
1.0
|
C2A
|
A:CLA306
|
4.3
|
32.0
|
1.0
|
C11
|
A:CLA305
|
4.6
|
32.8
|
1.0
|
ND1
|
A:HIS78
|
4.7
|
25.6
|
1.0
|
CG
|
A:HIS78
|
4.7
|
25.6
|
1.0
|
CBD
|
A:CLA306
|
4.9
|
32.0
|
1.0
|
|
Magnesium binding site 7 out
of 342 in 8z11
Go back to
Magnesium Binding Sites List in 8z11
Magnesium binding site 7 out
of 342 in the Cryo-Em Structure of Haptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg307
b:25.7
occ:1.00
|
MG
|
A:CLA307
|
0.0
|
25.7
|
1.0
|
NA
|
A:CLA307
|
1.9
|
25.7
|
1.0
|
NB
|
A:CLA307
|
1.9
|
25.7
|
1.0
|
ND
|
A:CLA307
|
1.9
|
25.7
|
1.0
|
NC
|
A:CLA307
|
2.0
|
25.7
|
1.0
|
OE2
|
A:GLU75
|
2.7
|
23.8
|
1.0
|
C4D
|
A:CLA307
|
2.9
|
25.7
|
1.0
|
C4A
|
A:CLA307
|
2.9
|
25.7
|
1.0
|
C21
|
A:DD6314
|
3.0
|
26.0
|
1.0
|
C1C
|
A:CLA307
|
3.0
|
25.7
|
1.0
|
C1B
|
A:CLA307
|
3.0
|
25.7
|
1.0
|
C1A
|
A:CLA307
|
3.0
|
25.7
|
1.0
|
C4B
|
A:CLA307
|
3.1
|
25.7
|
1.0
|
C4C
|
A:CLA307
|
3.1
|
25.7
|
1.0
|
C1D
|
A:CLA307
|
3.2
|
25.7
|
1.0
|
CHB
|
A:CLA307
|
3.3
|
25.7
|
1.0
|
CHC
|
A:CLA307
|
3.4
|
25.7
|
1.0
|
CHA
|
A:CLA307
|
3.4
|
25.7
|
1.0
|
CHD
|
A:CLA307
|
3.5
|
25.7
|
1.0
|
CD
|
A:GLU75
|
3.8
|
23.8
|
1.0
|
C3D
|
A:CLA307
|
4.2
|
25.7
|
1.0
|
C2B
|
A:CLA307
|
4.2
|
25.7
|
1.0
|
C3B
|
A:CLA307
|
4.2
|
25.7
|
1.0
|
C2D
|
A:CLA307
|
4.3
|
25.7
|
1.0
|
C3A
|
A:CLA307
|
4.3
|
25.7
|
1.0
|
C2C
|
A:CLA307
|
4.3
|
25.7
|
1.0
|
C2A
|
A:CLA307
|
4.3
|
25.7
|
1.0
|
C3C
|
A:CLA307
|
4.3
|
25.7
|
1.0
|
C20
|
A:DD6314
|
4.4
|
26.0
|
1.0
|
OE1
|
A:GLU75
|
4.4
|
23.8
|
1.0
|
O2A
|
A:CLA307
|
4.6
|
25.7
|
1.0
|
CBA
|
A:CLA307
|
4.6
|
25.7
|
1.0
|
NE
|
A:ARG180
|
4.7
|
22.8
|
1.0
|
NH2
|
A:ARG180
|
4.7
|
22.8
|
1.0
|
CG
|
A:GLU75
|
4.7
|
23.8
|
1.0
|
O1
|
A:DD6314
|
4.9
|
26.0
|
1.0
|
C4
|
A:CLA307
|
4.9
|
25.7
|
1.0
|
CBD
|
A:CLA307
|
4.9
|
25.7
|
1.0
|
CAA
|
A:CLA307
|
4.9
|
25.7
|
1.0
|
|
Magnesium binding site 8 out
of 342 in 8z11
Go back to
Magnesium Binding Sites List in 8z11
Magnesium binding site 8 out
of 342 in the Cryo-Em Structure of Haptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg308
b:24.1
occ:1.00
|
MG
|
A:CLA308
|
0.0
|
24.1
|
1.0
|
NA
|
A:CLA308
|
1.9
|
24.1
|
1.0
|
ND
|
A:CLA308
|
1.9
|
24.1
|
1.0
|
NB
|
A:CLA308
|
1.9
|
24.1
|
1.0
|
NC
|
A:CLA308
|
2.0
|
24.1
|
1.0
|
C4D
|
A:CLA308
|
2.9
|
24.1
|
1.0
|
C4A
|
A:CLA308
|
2.9
|
24.1
|
1.0
|
C1C
|
A:CLA308
|
3.0
|
24.1
|
1.0
|
C1B
|
A:CLA308
|
3.0
|
24.1
|
1.0
|
C1A
|
A:CLA308
|
3.0
|
24.1
|
1.0
|
C4B
|
A:CLA308
|
3.1
|
24.1
|
1.0
|
CMB
|
D:CLA314
|
3.1
|
25.6
|
1.0
|
C4C
|
A:CLA308
|
3.1
|
24.1
|
1.0
|
C1D
|
A:CLA308
|
3.2
|
24.1
|
1.0
|
CHB
|
A:CLA308
|
3.3
|
24.1
|
1.0
|
CHA
|
A:CLA308
|
3.4
|
24.1
|
1.0
|
CHC
|
A:CLA308
|
3.4
|
24.1
|
1.0
|
CHD
|
A:CLA308
|
3.6
|
24.1
|
1.0
|
C3D
|
A:CLA308
|
4.2
|
24.1
|
1.0
|
C2B
|
A:CLA308
|
4.2
|
24.1
|
1.0
|
C3B
|
A:CLA308
|
4.2
|
24.1
|
1.0
|
C2D
|
A:CLA308
|
4.3
|
24.1
|
1.0
|
C2C
|
A:CLA308
|
4.3
|
24.1
|
1.0
|
C3A
|
A:CLA308
|
4.3
|
24.1
|
1.0
|
C3C
|
A:CLA308
|
4.3
|
24.1
|
1.0
|
C2A
|
A:CLA308
|
4.3
|
24.1
|
1.0
|
CA
|
A:GLY188
|
4.4
|
22.5
|
1.0
|
C2B
|
D:CLA314
|
4.5
|
25.6
|
1.0
|
CBA
|
A:CLA308
|
4.7
|
24.1
|
1.0
|
O
|
A:GLY188
|
4.9
|
22.5
|
1.0
|
CBD
|
A:CLA308
|
4.9
|
24.1
|
1.0
|
|
Magnesium binding site 9 out
of 342 in 8z11
Go back to
Magnesium Binding Sites List in 8z11
Magnesium binding site 9 out
of 342 in the Cryo-Em Structure of Haptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg309
b:31.2
occ:1.00
|
MG
|
A:CLA309
|
0.0
|
31.2
|
1.0
|
NA
|
A:CLA309
|
1.9
|
31.2
|
1.0
|
ND
|
A:CLA309
|
1.9
|
31.2
|
1.0
|
NB
|
A:CLA309
|
1.9
|
31.2
|
1.0
|
NC
|
A:CLA309
|
2.0
|
31.2
|
1.0
|
OE1
|
A:GLN92
|
2.7
|
28.4
|
1.0
|
C4D
|
A:CLA309
|
2.9
|
31.2
|
1.0
|
C4A
|
A:CLA309
|
2.9
|
31.2
|
1.0
|
C1C
|
A:CLA309
|
3.0
|
31.2
|
1.0
|
C1B
|
A:CLA309
|
3.0
|
31.2
|
1.0
|
C1A
|
A:CLA309
|
3.0
|
31.2
|
1.0
|
C4B
|
A:CLA309
|
3.1
|
31.2
|
1.0
|
C4C
|
A:CLA309
|
3.1
|
31.2
|
1.0
|
C1D
|
A:CLA309
|
3.2
|
31.2
|
1.0
|
CHB
|
A:CLA309
|
3.3
|
31.2
|
1.0
|
CHA
|
A:CLA309
|
3.4
|
31.2
|
1.0
|
CHC
|
A:CLA309
|
3.4
|
31.2
|
1.0
|
CHD
|
A:CLA309
|
3.6
|
31.2
|
1.0
|
O2A
|
A:CLA309
|
3.6
|
31.2
|
1.0
|
CD
|
A:GLN92
|
3.8
|
28.4
|
1.0
|
C2
|
A:CLA309
|
3.9
|
31.2
|
1.0
|
C1
|
A:CLA309
|
3.9
|
31.2
|
1.0
|
C3D
|
A:CLA309
|
4.2
|
31.2
|
1.0
|
C2B
|
A:CLA309
|
4.2
|
31.2
|
1.0
|
C3B
|
A:CLA309
|
4.2
|
31.2
|
1.0
|
CG
|
A:GLN92
|
4.2
|
28.4
|
1.0
|
C2D
|
A:CLA309
|
4.3
|
31.2
|
1.0
|
C2C
|
A:CLA309
|
4.3
|
31.2
|
1.0
|
C3A
|
A:CLA309
|
4.3
|
31.2
|
1.0
|
C3C
|
A:CLA309
|
4.3
|
31.2
|
1.0
|
C2A
|
A:CLA309
|
4.3
|
31.2
|
1.0
|
C7
|
A:DD6313
|
4.4
|
34.9
|
1.0
|
CGA
|
A:CLA309
|
4.4
|
31.2
|
1.0
|
C3
|
A:CLA309
|
4.5
|
31.2
|
1.0
|
CBA
|
A:CLA309
|
4.7
|
31.2
|
1.0
|
C6
|
A:CLA309
|
4.8
|
31.2
|
1.0
|
NE2
|
A:GLN92
|
4.9
|
28.4
|
1.0
|
CBD
|
A:CLA309
|
4.9
|
31.2
|
1.0
|
|
Magnesium binding site 10 out
of 342 in 8z11
Go back to
Magnesium Binding Sites List in 8z11
Magnesium binding site 10 out
of 342 in the Cryo-Em Structure of Haptophyte Photosystem I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg310
b:40.1
occ:1.00
|
MG
|
A:KC2310
|
0.0
|
40.1
|
1.0
|
ND
|
A:KC2310
|
1.9
|
40.1
|
1.0
|
NC
|
A:KC2310
|
2.1
|
40.1
|
1.0
|
NB
|
A:KC2310
|
2.1
|
40.1
|
1.0
|
NA
|
A:KC2310
|
2.1
|
40.1
|
1.0
|
OE1
|
A:GLN121
|
2.6
|
40.4
|
1.0
|
C4D
|
A:KC2310
|
2.7
|
40.1
|
1.0
|
C1D
|
A:KC2310
|
3.0
|
40.1
|
1.0
|
C1A
|
A:KC2310
|
3.1
|
40.1
|
1.0
|
C4C
|
A:KC2310
|
3.1
|
40.1
|
1.0
|
C4A
|
A:KC2310
|
3.1
|
40.1
|
1.0
|
C1C
|
A:KC2310
|
3.1
|
40.1
|
1.0
|
C1B
|
A:KC2310
|
3.1
|
40.1
|
1.0
|
C4B
|
A:KC2310
|
3.2
|
40.1
|
1.0
|
CHA
|
A:KC2310
|
3.3
|
40.1
|
1.0
|
CD
|
A:GLN121
|
3.3
|
40.4
|
1.0
|
CHD
|
A:KC2310
|
3.5
|
40.1
|
1.0
|
CHB
|
A:KC2310
|
3.5
|
40.1
|
1.0
|
CHC
|
A:KC2310
|
3.6
|
40.1
|
1.0
|
NE2
|
A:GLN121
|
3.6
|
40.4
|
1.0
|
C3D
|
A:KC2310
|
4.0
|
40.1
|
1.0
|
C2D
|
A:KC2310
|
4.1
|
40.1
|
1.0
|
C35
|
N:LMG301
|
4.1
|
39.3
|
1.0
|
C33
|
N:LMG301
|
4.2
|
39.3
|
1.0
|
C2A
|
A:KC2310
|
4.3
|
40.1
|
1.0
|
C3C
|
A:KC2310
|
4.3
|
40.1
|
1.0
|
C3A
|
A:KC2310
|
4.3
|
40.1
|
1.0
|
C2C
|
A:KC2310
|
4.3
|
40.1
|
1.0
|
C3B
|
A:KC2310
|
4.4
|
40.1
|
1.0
|
C2B
|
A:KC2310
|
4.4
|
40.1
|
1.0
|
CG
|
A:GLN121
|
4.5
|
40.4
|
1.0
|
C32
|
N:LMG301
|
4.6
|
39.3
|
1.0
|
C34
|
N:LMG301
|
4.6
|
39.3
|
1.0
|
CB
|
A:GLN121
|
4.7
|
40.4
|
1.0
|
CBD
|
A:KC2310
|
4.8
|
40.1
|
1.0
|
C36
|
N:LMG301
|
4.9
|
39.3
|
1.0
|
|
Reference:
F.Y.He,
L.S.Zhao,
X.X.Qu,
K.Li,
J.P.Guo,
F.Zhao,
N.Wang,
B.Y.Qin,
X.L.Chen,
J.Gao,
L.N.Liu,
Y.Z.Zhang.
Structural Insights Into the Assembly and Energy Transfer of Haptophyte Photosystem I-Light-Harvesting Supercomplex. Proc.Natl.Acad.Sci.Usa V. 121 78121 2024.
ISSN: ESSN 1091-6490
PubMed: 39642204
DOI: 10.1073/PNAS.2413678121
Page generated: Sat Feb 8 20:53:32 2025
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