Magnesium in PDB 8z3p: The Structure of Type III Crispr-Associated Deaminase in Complex CA6 and Atp, Fully Activated

The structure of The Structure of Type III Crispr-Associated Deaminase in Complex CA6 and Atp, Fully Activated also contains other interesting chemical elements:

Zinc

(Zn)

6 atoms

The binding sites of Magnesium atom in the The Structure of Type III Crispr-Associated Deaminase in Complex CA6 and Atp, Fully Activated (pdb code 8z3p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Structure of Type III Crispr-Associated Deaminase in Complex CA6 and Atp, Fully Activated, PDB code: 8z3p:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Structure of Type III Crispr-Associated Deaminase in Complex CA6 and Atp, Fully Activated


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Type III Crispr-Associated Deaminase in Complex CA6 and Atp, Fully Activated within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg702 b:134.9 occ:1.00 O3B C:ATP701 2.0 146.6 1.0 O2G C:ATP701 2.4 143.2 1.0 O2B C:ATP701 2.4 136.8 1.0 PG C:ATP701 2.5 149.6 1.0 O3G C:ATP701 2.6 144.3 1.0 PB C:ATP701 2.7 153.3 1.0 O3A C:ATP701 3.4 143.2 1.0 H3' C:ATP701 3.8 136.5 1.0 O1G C:ATP701 3.9 139.0 1.0 O1B C:ATP701 4.0 135.9 1.0 H2' C:ATP701 4.2 135.1 1.0 O C:GLY318 4.4 110.9 1.0 O5' C:ATP701 4.5 134.7 1.0 O C:ASN321 4.6 105.6 1.0 C3' C:ATP701 4.7 135.1 1.0 PA C:ATP701 4.7 138.8 1.0 O C:GLY268 4.8 110.9 1.0 C2' C:ATP701 4.8 135.4 1.0 HO2' C:ATP701 5.0 134.2 1.0

Magnesium binding site 2 out of 2 in the The Structure of Type III Crispr-Associated Deaminase in Complex CA6 and Atp, Fully Activated


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of Type III Crispr-Associated Deaminase in Complex CA6 and Atp, Fully Activated within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg702 b:136.4 occ:1.00 O2B D:ATP701 2.0 142.4 1.0 O2G D:ATP701 2.0 148.2 1.0 O3B D:ATP701 2.1 146.0 1.0 PG D:ATP701 2.4 149.7 1.0 PB D:ATP701 2.5 153.4 1.0 O3G D:ATP701 2.8 146.2 1.0 O3' D:ATP701 3.4 142.0 1.0 O3A D:ATP701 3.6 147.5 1.0 O1B D:ATP701 3.7 139.2 1.0 O1G D:ATP701 3.8 140.5 1.0 HO3' D:ATP701 3.8 139.3 1.0 O D:GLY318 4.2 115.3 1.0 O D:ASN321 4.4 114.0 1.0 H3' D:ATP701 4.4 135.1 1.0 C3' D:ATP701 4.4 136.6 1.0 O D:MET315 5.0 119.8 1.0 CA D:GLY322 5.0 113.8 1.0

Y.Li, Z.Li, P.Yan, C.Hua, J.Kong, W.Wu, Y.Cui, Y.Duan, S.Li, G.Li, S.Ji, Y.Chen, Y.Zhao, P.Yang, C.Hu, M.Lu, M.Chen, Y.Xiao. Antiviral Signaling of A Type III Crispr-Associated Deaminase. Science R0393 2024.
ISSN: ESSN 1095-9203
PubMed: 39666823
DOI: 10.1126/SCIENCE.ADR0393