Magnesium in PDB 8zet: Tp-Psi-Fcpi-S in Thalassiosira Pseudonana

All present enzymatic activity of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana:
1.97.1.12;

The structure of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana also contains other interesting chemical elements:

Iron

(Fe)

12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 146;

Binding sites:

The binding sites of Magnesium atom in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana (pdb code 8zet). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 146 binding sites of Magnesium where determined in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana, PDB code: 8zet:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 146 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg801 b:61.8 occ:1.00 MG a:CLA801 0.0 61.8 1.0 NB a:CLA801 2.0 61.8 1.0 ND a:CLA801 2.0 61.8 1.0 NA a:CLA801 2.1 61.8 1.0 NC a:CLA801 2.1 61.8 1.0 C4D a:CLA801 2.9 61.8 1.0 NE2 a:HIS677 2.9 61.5 1.0 C1B a:CLA801 3.0 61.8 1.0 C4B a:CLA801 3.0 61.8 1.0 C4A a:CLA801 3.0 61.8 1.0 C1C a:CLA801 3.0 61.8 1.0 C4C a:CLA801 3.1 61.8 1.0 C1A a:CLA801 3.1 61.8 1.0 C1D a:CLA801 3.1 61.8 1.0 CHB a:CLA801 3.4 61.8 1.0 CHC a:CLA801 3.4 61.8 1.0 CHA a:CLA801 3.4 61.8 1.0 CHD a:CLA801 3.5 61.8 1.0 CAB b:CLA803 3.6 61.9 1.0 CD2 a:HIS677 3.7 61.5 1.0 C3B b:CLA803 3.9 61.9 1.0 CE1 a:HIS677 4.0 61.5 1.0 CHC b:CLA803 4.1 61.9 1.0 C4B b:CLA803 4.1 61.9 1.0 C3D a:CLA801 4.2 61.8 1.0 C2B a:CLA801 4.2 61.8 1.0 C3B a:CLA801 4.2 61.8 1.0 C2C a:CLA801 4.3 61.8 1.0 C2D a:CLA801 4.3 61.8 1.0 C3C a:CLA801 4.3 61.8 1.0 C3A a:CLA801 4.3 61.8 1.0 C2A a:CLA801 4.4 61.8 1.0 C2B b:CLA803 4.6 61.9 1.0 CBB b:CLA803 4.7 61.9 1.0 C1C b:CLA803 4.8 61.9 1.0 CBD a:CLA801 4.9 61.8 1.0 CZ a:PHE673 5.0 62.0 1.0 CG a:HIS677 5.0 61.5 1.0

Magnesium binding site 2 out of 146 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg802 b:63.1 occ:1.00 MG a:CLA802 0.0 63.1 1.0 NB a:CLA802 2.0 63.1 1.0 ND a:CLA802 2.0 63.1 1.0 NA a:CLA802 2.1 63.1 1.0 NC a:CLA802 2.1 63.1 1.0 C4D a:CLA802 2.9 63.1 1.0 C1B a:CLA802 3.0 63.1 1.0 C4A a:CLA802 3.0 63.1 1.0 C4B a:CLA802 3.1 63.1 1.0 C1C a:CLA802 3.1 63.1 1.0 C4C a:CLA802 3.1 63.1 1.0 C1A a:CLA802 3.1 63.1 1.0 C1D a:CLA802 3.2 63.1 1.0 SD a:MET685 3.3 62.5 1.0 CHB a:CLA802 3.4 63.1 1.0 CHC a:CLA802 3.4 63.1 1.0 CHA a:CLA802 3.5 63.1 1.0 CHD a:CLA802 3.5 63.1 1.0 NE1 b:TRP581 3.6 61.2 1.0 CZ2 b:TRP581 3.7 61.2 1.0 CE2 b:TRP581 4.0 61.2 1.0 C3D a:CLA802 4.3 63.1 1.0 CB a:MET685 4.3 62.5 1.0 C2B a:CLA802 4.3 63.1 1.0 C3B a:CLA802 4.3 63.1 1.0 C2C a:CLA802 4.3 63.1 1.0 C2D a:CLA802 4.4 63.1 1.0 C3C a:CLA802 4.4 63.1 1.0 C3A a:CLA802 4.4 63.1 1.0 C2A a:CLA802 4.4 63.1 1.0 CG a:MET685 4.5 62.5 1.0 CE a:MET685 4.7 62.5 1.0 CH2 b:TRP581 4.9 61.2 1.0 CD1 b:TRP581 4.9 61.2 1.0 CBD a:CLA802 4.9 63.1 1.0

Magnesium binding site 3 out of 146 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg803 b:71.7 occ:1.00 MG a:CLA803 0.0 71.7 1.0 NB a:CLA803 2.0 71.7 1.0 ND a:CLA803 2.0 71.7 1.0 NC a:CLA803 2.1 71.7 1.0 NA a:CLA803 2.1 71.7 1.0 NE2 a:HIS53 2.5 68.7 1.0 C4D a:CLA803 2.9 71.7 1.0 C1B a:CLA803 3.0 71.7 1.0 C4A a:CLA803 3.0 71.7 1.0 C4B a:CLA803 3.0 71.7 1.0 C1C a:CLA803 3.0 71.7 1.0 C4C a:CLA803 3.1 71.7 1.0 C1A a:CLA803 3.1 71.7 1.0 C1D a:CLA803 3.1 71.7 1.0 CHB a:CLA803 3.4 71.7 1.0 CHC a:CLA803 3.4 71.7 1.0 CE1 a:HIS53 3.4 68.7 1.0 CHA a:CLA803 3.4 71.7 1.0 CD2 a:HIS53 3.5 68.7 1.0 CHD a:CLA803 3.5 71.7 1.0 CB j:PRO12 3.7 71.3 1.0 CG j:PRO12 3.8 71.3 1.0 C3D a:CLA803 4.2 71.7 1.0 C2B a:CLA803 4.3 71.7 1.0 C3B a:CLA803 4.3 71.7 1.0 C2C a:CLA803 4.3 71.7 1.0 C3C a:CLA803 4.3 71.7 1.0 C2D a:CLA803 4.3 71.7 1.0 C3A a:CLA803 4.4 71.7 1.0 C2A a:CLA803 4.4 71.7 1.0 ND1 a:HIS53 4.6 68.7 1.0 CG a:HIS53 4.6 68.7 1.0 CD j:PRO12 4.8 71.3 1.0 C27 j:BCR105 4.9 70.7 1.0 CBD a:CLA803 4.9 71.7 1.0

Magnesium binding site 4 out of 146 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg804 b:70.7 occ:1.00 MG a:CLA804 0.0 70.7 1.0 NB a:CLA804 2.0 70.7 1.0 ND a:CLA804 2.0 70.7 1.0 NC a:CLA804 2.1 70.7 1.0 NA a:CLA804 2.1 70.7 1.0 NE2 a:HIS57 2.5 69.5 1.0 C4D a:CLA804 2.9 70.7 1.0 C1B a:CLA804 3.0 70.7 1.0 C4A a:CLA804 3.0 70.7 1.0 C4B a:CLA804 3.1 70.7 1.0 C1C a:CLA804 3.1 70.7 1.0 C4C a:CLA804 3.1 70.7 1.0 CE1 a:HIS57 3.1 69.5 1.0 C1D a:CLA804 3.2 70.7 1.0 C1A a:CLA804 3.2 70.7 1.0 CHB a:CLA804 3.4 70.7 1.0 CHC a:CLA804 3.4 70.7 1.0 CHA a:CLA804 3.5 70.7 1.0 CHD a:CLA804 3.5 70.7 1.0 CD2 a:HIS57 3.7 69.5 1.0 C7 a:CLA809 4.0 72.1 1.0 C10 a:CLA809 4.3 72.1 1.0 C3D a:CLA804 4.3 70.7 1.0 C2B a:CLA804 4.3 70.7 1.0 C3B a:CLA804 4.3 70.7 1.0 C2C a:CLA804 4.3 70.7 1.0 C2D a:CLA804 4.4 70.7 1.0 C3C a:CLA804 4.4 70.7 1.0 ND1 a:HIS57 4.4 69.5 1.0 C3A a:CLA804 4.4 70.7 1.0 C2A a:CLA804 4.5 70.7 1.0 CG a:HIS57 4.7 69.5 1.0 C8 a:CLA809 4.7 72.1 1.0 CBD a:CLA804 4.9 70.7 1.0 C5 a:CLA809 5.0 72.1 1.0

Magnesium binding site 5 out of 146 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg805 b:68.2 occ:1.00 MG a:CLA805 0.0 68.2 1.0 NB a:CLA805 2.0 68.2 1.0 ND a:CLA805 2.0 68.2 1.0 NC a:CLA805 2.1 68.2 1.0 NA a:CLA805 2.1 68.2 1.0 NE2 a:HIS77 2.3 68.2 1.0 C4D a:CLA805 2.9 68.2 1.0 C1B a:CLA805 3.0 68.2 1.0 C4A a:CLA805 3.0 68.2 1.0 C4B a:CLA805 3.1 68.2 1.0 CD2 a:HIS77 3.1 68.2 1.0 C1C a:CLA805 3.1 68.2 1.0 C4C a:CLA805 3.1 68.2 1.0 C1D a:CLA805 3.2 68.2 1.0 C1A a:CLA805 3.2 68.2 1.0 CE1 a:HIS77 3.3 68.2 1.0 CMB a:CLA820 3.3 67.9 1.0 CHB a:CLA805 3.4 68.2 1.0 CHC a:CLA805 3.4 68.2 1.0 CHA a:CLA805 3.5 68.2 1.0 CHD a:CLA805 3.5 68.2 1.0 CG a:HIS77 4.2 68.2 1.0 C3D a:CLA805 4.3 68.2 1.0 ND1 a:HIS77 4.3 68.2 1.0 C2B a:CLA805 4.3 68.2 1.0 C3B a:CLA805 4.3 68.2 1.0 C2C a:CLA805 4.3 68.2 1.0 C2D a:CLA805 4.4 68.2 1.0 C3C a:CLA805 4.4 68.2 1.0 C3A a:CLA805 4.4 68.2 1.0 C2A a:CLA805 4.5 68.2 1.0 CG2 a:ILE73 4.5 69.4 1.0 C2B a:CLA820 4.7 67.9 1.0 CBB a:CLA820 4.7 67.9 1.0 CBD a:CLA805 4.9 68.2 1.0

Magnesium binding site 6 out of 146 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg806 b:66.4 occ:1.00 MG a:CLA806 0.0 66.4 1.0 NB a:CLA806 2.0 66.4 1.0 ND a:CLA806 2.0 66.4 1.0 NC a:CLA806 2.1 66.4 1.0 NA a:CLA806 2.1 66.4 1.0 OE1 a:GLN80 2.3 67.2 1.0 C4D a:CLA806 2.9 66.4 1.0 C1B a:CLA806 3.0 66.4 1.0 C4A a:CLA806 3.0 66.4 1.0 C4B a:CLA806 3.1 66.4 1.0 C1C a:CLA806 3.1 66.4 1.0 C4C a:CLA806 3.1 66.4 1.0 C1D a:CLA806 3.2 66.4 1.0 C1A a:CLA806 3.2 66.4 1.0 CHB a:CLA806 3.4 66.4 1.0 CD a:GLN80 3.4 67.2 1.0 CHC a:CLA806 3.4 66.4 1.0 CHA a:CLA806 3.5 66.4 1.0 CHD a:CLA806 3.5 66.4 1.0 C17 a:CLA806 3.6 66.4 1.0 NE2 a:GLN80 3.9 67.2 1.0 C15 a:CLA806 4.0 66.4 1.0 C16 a:CLA806 4.2 66.4 1.0 C3D a:CLA806 4.3 66.4 1.0 C2B a:CLA806 4.3 66.4 1.0 C3B a:CLA806 4.3 66.4 1.0 C2C a:CLA806 4.3 66.4 1.0 C2D a:CLA806 4.4 66.4 1.0 C3C a:CLA806 4.4 66.4 1.0 C3A a:CLA806 4.4 66.4 1.0 C2A a:CLA806 4.5 66.4 1.0 C19 a:CLA806 4.5 66.4 1.0 C18 a:CLA806 4.6 66.4 1.0 CG a:GLN80 4.7 67.2 1.0 CMA a:CLA805 4.9 68.2 1.0 CBD a:CLA806 4.9 66.4 1.0

Magnesium binding site 7 out of 146 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg807 b:72.7 occ:1.00 MG a:CLA807 0.0 72.7 1.0 NB a:CLA807 2.0 72.7 1.0 ND a:CLA807 2.0 72.7 1.0 NC a:CLA807 2.1 72.7 1.0 NA a:CLA807 2.1 72.7 1.0 NE2 a:HIS94 2.3 71.6 1.0 C4D a:CLA807 2.9 72.7 1.0 C1B a:CLA807 3.0 72.7 1.0 C4B a:CLA807 3.0 72.7 1.0 C4A a:CLA807 3.0 72.7 1.0 C1C a:CLA807 3.1 72.7 1.0 CE1 a:HIS94 3.1 71.6 1.0 C1A a:CLA807 3.1 72.7 1.0 C4C a:CLA807 3.1 72.7 1.0 C1D a:CLA807 3.1 72.7 1.0 CHB a:CLA807 3.4 72.7 1.0 CHC a:CLA807 3.4 72.7 1.0 CHA a:CLA807 3.4 72.7 1.0 CD2 a:HIS94 3.4 71.6 1.0 CHD a:CLA807 3.5 72.7 1.0 C3D a:CLA807 4.2 72.7 1.0 C2B a:CLA807 4.3 72.7 1.0 ND1 a:HIS94 4.3 71.6 1.0 C3B a:CLA807 4.3 72.7 1.0 C2C a:CLA807 4.3 72.7 1.0 C2D a:CLA807 4.3 72.7 1.0 C3C a:CLA807 4.3 72.7 1.0 C3A a:CLA807 4.4 72.7 1.0 C2A a:CLA807 4.4 72.7 1.0 CG a:HIS94 4.5 71.6 1.0 CBA a:CLA807 4.9 72.7 1.0 CBD a:CLA807 4.9 72.7 1.0

Magnesium binding site 8 out of 146 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg808 b:70.4 occ:1.00 MG a:CLA808 0.0 70.4 1.0 NB a:CLA808 2.0 70.4 1.0 ND a:CLA808 2.0 70.4 1.0 NC a:CLA808 2.1 70.4 1.0 NA a:CLA808 2.1 70.4 1.0 OE1 a:GLN124 2.6 71.2 1.0 C4D a:CLA808 2.9 70.4 1.0 C1B a:CLA808 3.0 70.4 1.0 C4A a:CLA808 3.0 70.4 1.0 C4B a:CLA808 3.1 70.4 1.0 C1C a:CLA808 3.1 70.4 1.0 C4C a:CLA808 3.1 70.4 1.0 C1D a:CLA808 3.1 70.4 1.0 C1A a:CLA808 3.2 70.4 1.0 CHB a:CLA808 3.4 70.4 1.0 CHC a:CLA808 3.4 70.4 1.0 CHA a:CLA808 3.5 70.4 1.0 CHD a:CLA808 3.5 70.4 1.0 CD a:GLN124 3.8 71.2 1.0 C3D a:CLA808 4.3 70.4 1.0 C2B a:CLA808 4.3 70.4 1.0 C3B a:CLA808 4.3 70.4 1.0 C2C a:CLA808 4.3 70.4 1.0 C2D a:CLA808 4.4 70.4 1.0 C3C a:CLA808 4.4 70.4 1.0 C3A a:CLA808 4.4 70.4 1.0 NE2 a:GLN124 4.4 71.2 1.0 C2A a:CLA808 4.5 70.4 1.0 CB a:GLN124 4.9 71.2 1.0 CBD a:CLA808 4.9 70.4 1.0 CBB a:CLA839 5.0 68.4 1.0 CG a:GLN124 5.0 71.2 1.0

Magnesium binding site 9 out of 146 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg809 b:72.1 occ:1.00 MG a:CLA809 0.0 72.1 1.0 NB a:CLA809 2.0 72.1 1.0 ND a:CLA809 2.0 72.1 1.0 NC a:CLA809 2.1 72.1 1.0 NA a:CLA809 2.1 72.1 1.0 NE2 a:HIS182 2.6 75.5 1.0 O1A a:CLA804 2.8 70.7 1.0 C4D a:CLA809 2.9 72.1 1.0 C1B a:CLA809 3.0 72.1 1.0 C4A a:CLA809 3.1 72.1 1.0 C4B a:CLA809 3.1 72.1 1.0 C1C a:CLA809 3.1 72.1 1.0 C4C a:CLA809 3.1 72.1 1.0 C1D a:CLA809 3.1 72.1 1.0 C1A a:CLA809 3.2 72.1 1.0 CE1 a:HIS182 3.2 75.5 1.0 CHB a:CLA809 3.4 72.1 1.0 CHC a:CLA809 3.4 72.1 1.0 CHA a:CLA809 3.5 72.1 1.0 CHD a:CLA809 3.5 72.1 1.0 CGA a:CLA804 3.8 70.7 1.0 CD2 a:HIS182 3.8 75.5 1.0 C3D a:CLA809 4.3 72.1 1.0 C2B a:CLA809 4.3 72.1 1.0 C3B a:CLA809 4.3 72.1 1.0 C2C a:CLA809 4.3 72.1 1.0 C2D a:CLA809 4.4 72.1 1.0 C3C a:CLA809 4.4 72.1 1.0 C3A a:CLA809 4.4 72.1 1.0 ND1 a:HIS182 4.4 75.5 1.0 C2A a:CLA809 4.5 72.1 1.0 O2A a:CLA804 4.6 70.7 1.0 CG a:HIS182 4.8 75.5 1.0 CBA a:CLA804 4.8 70.7 1.0 C2 a:CLA804 4.9 70.7 1.0 CBD a:CLA809 4.9 72.1 1.0

Magnesium binding site 10 out of 146 in the Tp-Psi-Fcpi-S in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Tp-Psi-Fcpi-S in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg810 b:73.1 occ:1.00 MG a:CLA810 0.0 73.1 1.0 NB a:CLA810 2.0 73.1 1.0 ND a:CLA810 2.0 73.1 1.0 NC a:CLA810 2.1 73.1 1.0 NA a:CLA810 2.1 73.1 1.0 NE2 a:HIS201 2.3 70.9 1.0 C4D a:CLA810 2.9 73.1 1.0 C1B a:CLA810 3.0 73.1 1.0 C4A a:CLA810 3.0 73.1 1.0 C4B a:CLA810 3.1 73.1 1.0 C1C a:CLA810 3.1 73.1 1.0 C4C a:CLA810 3.1 73.1 1.0 C1D a:CLA810 3.2 73.1 1.0 C1A a:CLA810 3.2 73.1 1.0 CE1 a:HIS201 3.2 70.9 1.0 CD2 a:HIS201 3.3 70.9 1.0 CHB a:CLA810 3.4 73.1 1.0 CHC a:CLA810 3.4 73.1 1.0 CHA a:CLA810 3.5 73.1 1.0 CHD a:CLA810 3.5 73.1 1.0 CBB a:CLA848 3.8 81.7 1.0 CMB a:CLA848 4.1 81.7 1.0 C3D a:CLA810 4.3 73.1 1.0 C2B a:CLA810 4.3 73.1 1.0 C3B a:CLA810 4.3 73.1 1.0 C2C a:CLA810 4.3 73.1 1.0 ND1 a:HIS201 4.3 70.9 1.0 C2D a:CLA810 4.4 73.1 1.0 C3C a:CLA810 4.4 73.1 1.0 CG a:HIS201 4.4 70.9 1.0 C3A a:CLA810 4.4 73.1 1.0 C2A a:CLA810 4.5 73.1 1.0 CAB a:CLA848 4.5 81.7 1.0 CBD a:CLA810 4.9 73.1 1.0

Y.Feng, Z.Li, Y.Yang, L.Shen, X.Li, X.Liu, X.Zhang, J.Zhang, F.Ren, Y.Wang, C.Liu, G.Han, X.Wang, T.Kuang, J.R.Shen, W.Wang. Structures of Psi-Fcpi From Thalassiosira Pseudonana Grown Under High Light Provide Evidence For Convergent Evolution and Light-Adaptive Strategies in Diatom Fcpis. J Integr Plant Biol 2024.
ISSN: ESSN 1744-7909
PubMed: 39670505
DOI: 10.1111/JIPB.13816