Magnesium in PDB 8zjf: Cryo-Em Structure of Human Integrin Alpha-E Beta-7

The structure of Cryo-Em Structure of Human Integrin Alpha-E Beta-7 also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of Human Integrin Alpha-E Beta-7 (pdb code 8zjf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Human Integrin Alpha-E Beta-7, PDB code: 8zjf:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Human Integrin Alpha-E Beta-7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human Integrin Alpha-E Beta-7 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg901 b:16.4 occ:1.00 OG B:SER161 2.6 16.0 1.0 OE2 B:GLU259 3.3 15.4 1.0 CB B:SER161 3.3 18.2 1.0 CD B:GLU259 3.7 23.5 1.0 O B:SER257 3.9 25.9 1.0 OG B:SER163 4.1 17.0 1.0 CG B:GLU259 4.2 15.9 1.0 O B:SER161 4.2 16.0 1.0 OD2 B:ASP290 4.2 15.8 1.0 OD1 B:ASP289 4.2 15.7 1.0 OD2 B:ASP159 4.2 17.2 1.0 CB B:ASP290 4.3 16.4 1.0 OE1 B:GLU259 4.4 15.2 1.0 OD1 B:ASN254 4.5 17.9 1.0 CA B:SER161 4.7 14.6 1.0 CG B:ASP290 4.7 15.5 1.0 C B:SER161 4.8 18.2 1.0 CB B:SER163 4.9 17.2 1.0 C B:SER257 4.9 24.4 1.0

H.Akasaka, D.Sato, W.Shihoya, O.Nureki, Y.Kise. Cryo-Em Structure of I Domain-Containing Integrin Alpha E Beta 7. Biochem.Biophys.Res.Commun. V. 721 50121 2024.
ISSN: ESSN 1090-2104
PubMed: 38781659
DOI: 10.1016/J.BBRC.2024.150121