Magnesium in PDB 8zjw: Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum
Magnesium Binding Sites:
Magnesium binding site 1 out
of 42 in 8zjw
Go back to
Magnesium Binding Sites List in 8zjw
Magnesium binding site 1 out
of 42 in the Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg101
b:4.6
occ:1.00
|
MG
|
B:BCL101
|
0.0
|
4.6
|
1.0
|
NC
|
B:BCL101
|
2.0
|
4.6
|
1.0
|
NA
|
B:BCL101
|
2.0
|
4.6
|
1.0
|
ND
|
B:BCL101
|
2.1
|
4.6
|
1.0
|
NB
|
B:BCL101
|
2.1
|
4.6
|
1.0
|
NE2
|
B:HIS40
|
2.1
|
4.2
|
1.0
|
C4A
|
B:BCL101
|
3.0
|
4.6
|
1.0
|
C4D
|
B:BCL101
|
3.0
|
4.6
|
1.0
|
C1A
|
B:BCL101
|
3.0
|
4.6
|
1.0
|
C4C
|
B:BCL101
|
3.0
|
4.6
|
1.0
|
C1C
|
B:BCL101
|
3.0
|
4.6
|
1.0
|
C1B
|
B:BCL101
|
3.1
|
4.6
|
1.0
|
CD2
|
B:HIS40
|
3.1
|
4.2
|
1.0
|
C4B
|
B:BCL101
|
3.1
|
4.6
|
1.0
|
C1D
|
B:BCL101
|
3.2
|
4.6
|
1.0
|
CE1
|
B:HIS40
|
3.2
|
4.2
|
1.0
|
CHB
|
B:BCL101
|
3.3
|
4.6
|
1.0
|
CHC
|
B:BCL101
|
3.4
|
4.6
|
1.0
|
CHA
|
B:BCL101
|
3.4
|
4.6
|
1.0
|
CHD
|
B:BCL101
|
3.5
|
4.6
|
1.0
|
CBB
|
C:BCL102
|
4.0
|
5.3
|
1.0
|
CMB
|
C:BCL102
|
4.0
|
5.3
|
1.0
|
C3D
|
B:BCL101
|
4.2
|
4.6
|
1.0
|
ND1
|
B:HIS40
|
4.2
|
4.2
|
1.0
|
CG
|
B:HIS40
|
4.3
|
4.2
|
1.0
|
C2A
|
B:BCL101
|
4.3
|
4.6
|
1.0
|
C3A
|
B:BCL101
|
4.3
|
4.6
|
1.0
|
C2C
|
B:BCL101
|
4.3
|
4.6
|
1.0
|
C3C
|
B:BCL101
|
4.3
|
4.6
|
1.0
|
C2D
|
B:BCL101
|
4.4
|
4.6
|
1.0
|
C3B
|
B:BCL101
|
4.4
|
4.6
|
1.0
|
C2B
|
B:BCL101
|
4.4
|
4.6
|
1.0
|
CAB
|
C:BCL102
|
4.5
|
5.3
|
1.0
|
C2B
|
C:BCL102
|
4.6
|
5.3
|
1.0
|
C10
|
B:BCL101
|
4.6
|
4.6
|
1.0
|
CG2
|
A:ILE32
|
4.6
|
4.2
|
1.0
|
CD1
|
A:ILE32
|
4.7
|
4.2
|
1.0
|
CMD
|
A:BCL101
|
4.7
|
5.6
|
1.0
|
C3B
|
C:BCL102
|
4.9
|
5.3
|
1.0
|
CBD
|
B:BCL101
|
4.9
|
4.6
|
1.0
|
|
Magnesium binding site 2 out
of 42 in 8zjw
Go back to
Magnesium Binding Sites List in 8zjw
Magnesium binding site 2 out
of 42 in the Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg101
b:5.6
occ:1.00
|
MG
|
A:BCL101
|
0.0
|
5.6
|
1.0
|
NA
|
A:BCL101
|
2.0
|
5.6
|
1.0
|
NC
|
A:BCL101
|
2.0
|
5.6
|
1.0
|
ND
|
A:BCL101
|
2.1
|
5.6
|
1.0
|
NB
|
A:BCL101
|
2.1
|
5.6
|
1.0
|
NE2
|
A:HIS33
|
2.6
|
4.4
|
1.0
|
C4D
|
A:BCL101
|
2.9
|
5.6
|
1.0
|
C1A
|
A:BCL101
|
3.0
|
5.6
|
1.0
|
C4A
|
A:BCL101
|
3.0
|
5.6
|
1.0
|
C1C
|
A:BCL101
|
3.0
|
5.6
|
1.0
|
C4C
|
A:BCL101
|
3.0
|
5.6
|
1.0
|
C1B
|
A:BCL101
|
3.0
|
5.6
|
1.0
|
C4B
|
A:BCL101
|
3.1
|
5.6
|
1.0
|
C1D
|
A:BCL101
|
3.2
|
5.6
|
1.0
|
CHB
|
A:BCL101
|
3.3
|
5.6
|
1.0
|
CHA
|
A:BCL101
|
3.4
|
5.6
|
1.0
|
CHC
|
A:BCL101
|
3.4
|
5.6
|
1.0
|
CE1
|
A:HIS33
|
3.5
|
4.4
|
1.0
|
CHD
|
A:BCL101
|
3.6
|
5.6
|
1.0
|
CD2
|
A:HIS33
|
3.6
|
4.4
|
1.0
|
CBB
|
D:BCL101
|
3.9
|
4.9
|
1.0
|
C3D
|
A:BCL101
|
4.1
|
5.6
|
1.0
|
CMB
|
D:BCL101
|
4.2
|
4.9
|
1.0
|
C2A
|
A:BCL101
|
4.3
|
5.6
|
1.0
|
C3A
|
A:BCL101
|
4.3
|
5.6
|
1.0
|
C2C
|
A:BCL101
|
4.3
|
5.6
|
1.0
|
C3C
|
A:BCL101
|
4.3
|
5.6
|
1.0
|
C2B
|
A:BCL101
|
4.4
|
5.6
|
1.0
|
C3B
|
A:BCL101
|
4.4
|
5.6
|
1.0
|
C2D
|
A:BCL101
|
4.4
|
5.6
|
1.0
|
CMD
|
B:BCL101
|
4.4
|
4.6
|
1.0
|
ND1
|
A:HIS33
|
4.7
|
4.4
|
1.0
|
C2B
|
D:BCL101
|
4.7
|
4.9
|
1.0
|
CAB
|
D:BCL101
|
4.8
|
4.9
|
1.0
|
CG
|
A:HIS33
|
4.8
|
4.4
|
1.0
|
CBD
|
A:BCL101
|
4.8
|
5.6
|
1.0
|
C3B
|
D:BCL101
|
5.0
|
4.9
|
1.0
|
|
Magnesium binding site 3 out
of 42 in 8zjw
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Magnesium Binding Sites List in 8zjw
Magnesium binding site 3 out
of 42 in the Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg102
b:11.3
occ:1.00
|
MG
|
A:BCL102
|
0.0
|
11.3
|
1.0
|
NA
|
A:BCL102
|
2.0
|
11.3
|
1.0
|
ND
|
A:BCL102
|
2.0
|
11.3
|
1.0
|
NC
|
A:BCL102
|
2.0
|
11.3
|
1.0
|
NB
|
A:BCL102
|
2.0
|
11.3
|
1.0
|
O
|
A:MET1
|
2.2
|
12.6
|
1.0
|
C4D
|
A:BCL102
|
2.9
|
11.3
|
1.0
|
C4A
|
A:BCL102
|
3.0
|
11.3
|
1.0
|
C1A
|
A:BCL102
|
3.0
|
11.3
|
1.0
|
C1B
|
A:BCL102
|
3.0
|
11.3
|
1.0
|
C1C
|
A:BCL102
|
3.0
|
11.3
|
1.0
|
C4C
|
A:BCL102
|
3.0
|
11.3
|
1.0
|
C4B
|
A:BCL102
|
3.1
|
11.3
|
1.0
|
C11
|
A:BCL102
|
3.1
|
11.3
|
1.0
|
C1D
|
A:BCL102
|
3.2
|
11.3
|
1.0
|
CHB
|
A:BCL102
|
3.3
|
11.3
|
1.0
|
CHA
|
A:BCL102
|
3.4
|
11.3
|
1.0
|
CHC
|
A:BCL102
|
3.4
|
11.3
|
1.0
|
C
|
A:MET1
|
3.4
|
12.6
|
1.0
|
C10
|
A:BCL102
|
3.5
|
11.3
|
1.0
|
CHD
|
A:BCL102
|
3.5
|
11.3
|
1.0
|
C12
|
A:BCL102
|
4.1
|
11.3
|
1.0
|
C3D
|
A:BCL102
|
4.1
|
11.3
|
1.0
|
C13
|
A:BCL102
|
4.2
|
11.3
|
1.0
|
C3A
|
A:BCL102
|
4.3
|
11.3
|
1.0
|
N
|
A:THR2
|
4.3
|
12.4
|
1.0
|
C2C
|
A:BCL102
|
4.3
|
11.3
|
1.0
|
C2A
|
A:BCL102
|
4.3
|
11.3
|
1.0
|
C3B
|
A:BCL102
|
4.4
|
11.3
|
1.0
|
CA
|
A:THR2
|
4.4
|
12.4
|
1.0
|
C2B
|
A:BCL102
|
4.4
|
11.3
|
1.0
|
C3C
|
A:BCL102
|
4.4
|
11.3
|
1.0
|
C2D
|
A:BCL102
|
4.4
|
11.3
|
1.0
|
CA
|
A:MET1
|
4.4
|
12.6
|
1.0
|
N
|
A:MET1
|
4.4
|
12.6
|
1.0
|
CG2
|
A:THR2
|
4.5
|
12.4
|
1.0
|
C9
|
A:BCL102
|
4.6
|
11.3
|
1.0
|
C8
|
A:BCL102
|
4.7
|
11.3
|
1.0
|
CB
|
A:MET1
|
4.8
|
12.6
|
1.0
|
CBD
|
A:BCL102
|
4.8
|
11.3
|
1.0
|
|
Magnesium binding site 4 out
of 42 in 8zjw
Go back to
Magnesium Binding Sites List in 8zjw
Magnesium binding site 4 out
of 42 in the Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg101
b:4.9
occ:1.00
|
MG
|
D:BCL101
|
0.0
|
4.9
|
1.0
|
NC
|
D:BCL101
|
2.0
|
4.9
|
1.0
|
NA
|
D:BCL101
|
2.0
|
4.9
|
1.0
|
NE2
|
D:HIS40
|
2.0
|
4.5
|
1.0
|
ND
|
D:BCL101
|
2.1
|
4.9
|
1.0
|
NB
|
D:BCL101
|
2.1
|
4.9
|
1.0
|
C4A
|
D:BCL101
|
3.0
|
4.9
|
1.0
|
CD2
|
D:HIS40
|
3.0
|
4.5
|
1.0
|
C4D
|
D:BCL101
|
3.0
|
4.9
|
1.0
|
C1A
|
D:BCL101
|
3.0
|
4.9
|
1.0
|
C4C
|
D:BCL101
|
3.0
|
4.9
|
1.0
|
C1C
|
D:BCL101
|
3.0
|
4.9
|
1.0
|
CE1
|
D:HIS40
|
3.1
|
4.5
|
1.0
|
C1B
|
D:BCL101
|
3.1
|
4.9
|
1.0
|
C4B
|
D:BCL101
|
3.1
|
4.9
|
1.0
|
C1D
|
D:BCL101
|
3.2
|
4.9
|
1.0
|
CHB
|
D:BCL101
|
3.3
|
4.9
|
1.0
|
CHC
|
D:BCL101
|
3.4
|
4.9
|
1.0
|
CHA
|
D:BCL101
|
3.4
|
4.9
|
1.0
|
CHD
|
D:BCL101
|
3.5
|
4.9
|
1.0
|
CBB
|
A:BCL101
|
4.0
|
5.6
|
1.0
|
ND1
|
D:HIS40
|
4.1
|
4.5
|
1.0
|
CG
|
D:HIS40
|
4.1
|
4.5
|
1.0
|
C3D
|
D:BCL101
|
4.2
|
4.9
|
1.0
|
CMB
|
A:BCL101
|
4.2
|
5.6
|
1.0
|
C2A
|
D:BCL101
|
4.3
|
4.9
|
1.0
|
C3A
|
D:BCL101
|
4.3
|
4.9
|
1.0
|
C2C
|
D:BCL101
|
4.3
|
4.9
|
1.0
|
C3C
|
D:BCL101
|
4.3
|
4.9
|
1.0
|
C3B
|
D:BCL101
|
4.4
|
4.9
|
1.0
|
C2B
|
D:BCL101
|
4.4
|
4.9
|
1.0
|
C2D
|
D:BCL101
|
4.4
|
4.9
|
1.0
|
CMD
|
E:BCL101
|
4.6
|
5.7
|
1.0
|
CAB
|
A:BCL101
|
4.7
|
5.6
|
1.0
|
CG2
|
E:ILE32
|
4.7
|
4.4
|
1.0
|
C2B
|
A:BCL101
|
4.7
|
5.6
|
1.0
|
C10
|
D:BCL101
|
4.8
|
4.9
|
1.0
|
C8
|
D:BCL101
|
4.9
|
4.9
|
1.0
|
CD1
|
E:ILE32
|
4.9
|
4.4
|
1.0
|
CBD
|
D:BCL101
|
4.9
|
4.9
|
1.0
|
C3B
|
A:BCL101
|
4.9
|
5.6
|
1.0
|
|
Magnesium binding site 5 out
of 42 in 8zjw
Go back to
Magnesium Binding Sites List in 8zjw
Magnesium binding site 5 out
of 42 in the Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg101
b:5.7
occ:1.00
|
MG
|
E:BCL101
|
0.0
|
5.7
|
1.0
|
NA
|
E:BCL101
|
2.0
|
5.7
|
1.0
|
NC
|
E:BCL101
|
2.0
|
5.7
|
1.0
|
NB
|
E:BCL101
|
2.1
|
5.7
|
1.0
|
ND
|
E:BCL101
|
2.1
|
5.7
|
1.0
|
NE2
|
E:HIS33
|
2.5
|
4.6
|
1.0
|
C4D
|
E:BCL101
|
3.0
|
5.7
|
1.0
|
C1A
|
E:BCL101
|
3.0
|
5.7
|
1.0
|
C4A
|
E:BCL101
|
3.0
|
5.7
|
1.0
|
C4C
|
E:BCL101
|
3.0
|
5.7
|
1.0
|
C1C
|
E:BCL101
|
3.0
|
5.7
|
1.0
|
C1B
|
E:BCL101
|
3.0
|
5.7
|
1.0
|
C4B
|
E:BCL101
|
3.1
|
5.7
|
1.0
|
C1D
|
E:BCL101
|
3.2
|
5.7
|
1.0
|
CE1
|
E:HIS33
|
3.3
|
4.6
|
1.0
|
CHB
|
E:BCL101
|
3.3
|
5.7
|
1.0
|
CHC
|
E:BCL101
|
3.4
|
5.7
|
1.0
|
CHA
|
E:BCL101
|
3.4
|
5.7
|
1.0
|
CHD
|
E:BCL101
|
3.5
|
5.7
|
1.0
|
CD2
|
E:HIS33
|
3.7
|
4.6
|
1.0
|
CBB
|
F:BCL101
|
3.8
|
4.9
|
1.0
|
CMB
|
F:BCL101
|
4.0
|
4.9
|
1.0
|
C3D
|
E:BCL101
|
4.2
|
5.7
|
1.0
|
C2A
|
E:BCL101
|
4.3
|
5.7
|
1.0
|
C3C
|
E:BCL101
|
4.3
|
5.7
|
1.0
|
C3A
|
E:BCL101
|
4.3
|
5.7
|
1.0
|
C2C
|
E:BCL101
|
4.3
|
5.7
|
1.0
|
C2B
|
E:BCL101
|
4.4
|
5.7
|
1.0
|
C3B
|
E:BCL101
|
4.4
|
5.7
|
1.0
|
C2D
|
E:BCL101
|
4.5
|
5.7
|
1.0
|
CMD
|
D:BCL101
|
4.5
|
4.9
|
1.0
|
C2B
|
F:BCL101
|
4.5
|
4.9
|
1.0
|
ND1
|
E:HIS33
|
4.5
|
4.6
|
1.0
|
CAB
|
F:BCL101
|
4.6
|
4.9
|
1.0
|
CG
|
E:HIS33
|
4.7
|
4.6
|
1.0
|
C3B
|
F:BCL101
|
4.8
|
4.9
|
1.0
|
CBD
|
E:BCL101
|
4.9
|
5.7
|
1.0
|
|
Magnesium binding site 6 out
of 42 in 8zjw
Go back to
Magnesium Binding Sites List in 8zjw
Magnesium binding site 6 out
of 42 in the Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg102
b:10.8
occ:1.00
|
MG
|
E:BCL102
|
0.0
|
10.8
|
1.0
|
ND
|
E:BCL102
|
2.0
|
10.8
|
1.0
|
NA
|
E:BCL102
|
2.0
|
10.8
|
1.0
|
NC
|
E:BCL102
|
2.0
|
10.8
|
1.0
|
NB
|
E:BCL102
|
2.1
|
10.8
|
1.0
|
O
|
E:MET1
|
2.2
|
12.0
|
1.0
|
C4D
|
E:BCL102
|
2.9
|
10.8
|
1.0
|
C10
|
E:BCL102
|
2.9
|
10.8
|
1.0
|
C4A
|
E:BCL102
|
3.0
|
10.8
|
1.0
|
C1C
|
E:BCL102
|
3.0
|
10.8
|
1.0
|
C1A
|
E:BCL102
|
3.0
|
10.8
|
1.0
|
C1B
|
E:BCL102
|
3.0
|
10.8
|
1.0
|
C4C
|
E:BCL102
|
3.0
|
10.8
|
1.0
|
C4B
|
E:BCL102
|
3.1
|
10.8
|
1.0
|
C1D
|
E:BCL102
|
3.1
|
10.8
|
1.0
|
C11
|
E:BCL102
|
3.3
|
10.8
|
1.0
|
CHB
|
E:BCL102
|
3.3
|
10.8
|
1.0
|
CHC
|
E:BCL102
|
3.4
|
10.8
|
1.0
|
C
|
E:MET1
|
3.4
|
12.0
|
1.0
|
CHA
|
E:BCL102
|
3.4
|
10.8
|
1.0
|
CHD
|
E:BCL102
|
3.5
|
10.8
|
1.0
|
C12
|
E:BCL102
|
3.7
|
10.8
|
1.0
|
C3D
|
E:BCL102
|
4.1
|
10.8
|
1.0
|
N
|
E:MET1
|
4.2
|
12.0
|
1.0
|
C8
|
E:BCL102
|
4.3
|
10.8
|
1.0
|
C2C
|
E:BCL102
|
4.3
|
10.8
|
1.0
|
CA
|
E:MET1
|
4.3
|
12.0
|
1.0
|
C3A
|
E:BCL102
|
4.3
|
10.8
|
1.0
|
N
|
E:THR2
|
4.3
|
12.2
|
1.0
|
C2A
|
E:BCL102
|
4.3
|
10.8
|
1.0
|
C3C
|
E:BCL102
|
4.4
|
10.8
|
1.0
|
C3B
|
E:BCL102
|
4.4
|
10.8
|
1.0
|
C2D
|
E:BCL102
|
4.4
|
10.8
|
1.0
|
C2B
|
E:BCL102
|
4.4
|
10.8
|
1.0
|
CA
|
E:THR2
|
4.4
|
12.2
|
1.0
|
C9
|
E:BCL102
|
4.6
|
10.8
|
1.0
|
CG2
|
E:THR2
|
4.7
|
12.2
|
1.0
|
CB
|
E:MET1
|
4.7
|
12.0
|
1.0
|
C7
|
E:BCL102
|
4.8
|
10.8
|
1.0
|
CBD
|
E:BCL102
|
4.9
|
10.8
|
1.0
|
CMC
|
E:BCL102
|
5.0
|
10.8
|
1.0
|
C13
|
E:BCL102
|
5.0
|
10.8
|
1.0
|
|
Magnesium binding site 7 out
of 42 in 8zjw
Go back to
Magnesium Binding Sites List in 8zjw
Magnesium binding site 7 out
of 42 in the Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg101
b:4.9
occ:1.00
|
MG
|
F:BCL101
|
0.0
|
4.9
|
1.0
|
NC
|
F:BCL101
|
2.0
|
4.9
|
1.0
|
NA
|
F:BCL101
|
2.0
|
4.9
|
1.0
|
ND
|
F:BCL101
|
2.0
|
4.9
|
1.0
|
NB
|
F:BCL101
|
2.1
|
4.9
|
1.0
|
NE2
|
F:HIS40
|
2.1
|
4.5
|
1.0
|
C4D
|
F:BCL101
|
2.9
|
4.9
|
1.0
|
C4A
|
F:BCL101
|
3.0
|
4.9
|
1.0
|
C1A
|
F:BCL101
|
3.0
|
4.9
|
1.0
|
C4C
|
F:BCL101
|
3.0
|
4.9
|
1.0
|
C1C
|
F:BCL101
|
3.0
|
4.9
|
1.0
|
CD2
|
F:HIS40
|
3.0
|
4.5
|
1.0
|
C1B
|
F:BCL101
|
3.1
|
4.9
|
1.0
|
C4B
|
F:BCL101
|
3.1
|
4.9
|
1.0
|
C1D
|
F:BCL101
|
3.1
|
4.9
|
1.0
|
CE1
|
F:HIS40
|
3.1
|
4.5
|
1.0
|
CHB
|
F:BCL101
|
3.4
|
4.9
|
1.0
|
CHC
|
F:BCL101
|
3.4
|
4.9
|
1.0
|
CHA
|
F:BCL101
|
3.4
|
4.9
|
1.0
|
CHD
|
F:BCL101
|
3.5
|
4.9
|
1.0
|
CBB
|
E:BCL101
|
4.1
|
5.7
|
1.0
|
C3D
|
F:BCL101
|
4.1
|
4.9
|
1.0
|
CMB
|
E:BCL101
|
4.2
|
5.7
|
1.0
|
CG
|
F:HIS40
|
4.2
|
4.5
|
1.0
|
ND1
|
F:HIS40
|
4.2
|
4.5
|
1.0
|
C2A
|
F:BCL101
|
4.3
|
4.9
|
1.0
|
C3A
|
F:BCL101
|
4.3
|
4.9
|
1.0
|
C3C
|
F:BCL101
|
4.3
|
4.9
|
1.0
|
C2C
|
F:BCL101
|
4.3
|
4.9
|
1.0
|
C2D
|
F:BCL101
|
4.4
|
4.9
|
1.0
|
C3B
|
F:BCL101
|
4.4
|
4.9
|
1.0
|
C2B
|
F:BCL101
|
4.4
|
4.9
|
1.0
|
C10
|
F:BCL101
|
4.5
|
4.9
|
1.0
|
CAB
|
E:BCL101
|
4.6
|
5.7
|
1.0
|
CG2
|
G:ILE32
|
4.6
|
4.2
|
1.0
|
C2B
|
E:BCL101
|
4.7
|
5.7
|
1.0
|
CD1
|
G:ILE32
|
4.7
|
4.2
|
1.0
|
CMD
|
G:BCL101
|
4.8
|
5.6
|
1.0
|
C3B
|
E:BCL101
|
4.9
|
5.7
|
1.0
|
CBD
|
F:BCL101
|
4.9
|
4.9
|
1.0
|
|
Magnesium binding site 8 out
of 42 in 8zjw
Go back to
Magnesium Binding Sites List in 8zjw
Magnesium binding site 8 out
of 42 in the Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg101
b:5.6
occ:1.00
|
MG
|
G:BCL101
|
0.0
|
5.6
|
1.0
|
NA
|
G:BCL101
|
2.0
|
5.6
|
1.0
|
NC
|
G:BCL101
|
2.0
|
5.6
|
1.0
|
ND
|
G:BCL101
|
2.0
|
5.6
|
1.0
|
NB
|
G:BCL101
|
2.1
|
5.6
|
1.0
|
NE2
|
G:HIS33
|
2.4
|
4.4
|
1.0
|
C4D
|
G:BCL101
|
2.9
|
5.6
|
1.0
|
C4A
|
G:BCL101
|
2.9
|
5.6
|
1.0
|
C1A
|
G:BCL101
|
3.0
|
5.6
|
1.0
|
C1C
|
G:BCL101
|
3.0
|
5.6
|
1.0
|
C1B
|
G:BCL101
|
3.0
|
5.6
|
1.0
|
C4C
|
G:BCL101
|
3.0
|
5.6
|
1.0
|
C4B
|
G:BCL101
|
3.1
|
5.6
|
1.0
|
CE1
|
G:HIS33
|
3.2
|
4.4
|
1.0
|
C1D
|
G:BCL101
|
3.2
|
5.6
|
1.0
|
CHB
|
G:BCL101
|
3.3
|
5.6
|
1.0
|
CHA
|
G:BCL101
|
3.4
|
5.6
|
1.0
|
CHC
|
G:BCL101
|
3.4
|
5.6
|
1.0
|
CHD
|
G:BCL101
|
3.6
|
5.6
|
1.0
|
CD2
|
G:HIS33
|
3.6
|
4.4
|
1.0
|
CBB
|
I:BCL101
|
4.0
|
4.7
|
1.0
|
C3D
|
G:BCL101
|
4.1
|
5.6
|
1.0
|
CMB
|
I:BCL101
|
4.2
|
4.7
|
1.0
|
C2A
|
G:BCL101
|
4.3
|
5.6
|
1.0
|
C3A
|
G:BCL101
|
4.3
|
5.6
|
1.0
|
C3C
|
G:BCL101
|
4.3
|
5.6
|
1.0
|
C2C
|
G:BCL101
|
4.3
|
5.6
|
1.0
|
C3B
|
G:BCL101
|
4.3
|
5.6
|
1.0
|
C2B
|
G:BCL101
|
4.3
|
5.6
|
1.0
|
ND1
|
G:HIS33
|
4.4
|
4.4
|
1.0
|
C2D
|
G:BCL101
|
4.4
|
5.6
|
1.0
|
CMD
|
F:BCL101
|
4.5
|
4.9
|
1.0
|
CG
|
G:HIS33
|
4.6
|
4.4
|
1.0
|
C2B
|
I:BCL101
|
4.7
|
4.7
|
1.0
|
CAB
|
I:BCL101
|
4.8
|
4.7
|
1.0
|
CBD
|
G:BCL101
|
4.9
|
5.6
|
1.0
|
C3B
|
I:BCL101
|
5.0
|
4.7
|
1.0
|
|
Magnesium binding site 9 out
of 42 in 8zjw
Go back to
Magnesium Binding Sites List in 8zjw
Magnesium binding site 9 out
of 42 in the Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg102
b:10.1
occ:1.00
|
MG
|
G:BCL102
|
0.0
|
10.1
|
1.0
|
O
|
G:MET1
|
2.0
|
11.5
|
1.0
|
NA
|
G:BCL102
|
2.0
|
10.1
|
1.0
|
ND
|
G:BCL102
|
2.0
|
10.1
|
1.0
|
NC
|
G:BCL102
|
2.1
|
10.1
|
1.0
|
NB
|
G:BCL102
|
2.1
|
10.1
|
1.0
|
C4D
|
G:BCL102
|
2.9
|
10.1
|
1.0
|
C4A
|
G:BCL102
|
3.0
|
10.1
|
1.0
|
C1A
|
G:BCL102
|
3.0
|
10.1
|
1.0
|
C1C
|
G:BCL102
|
3.0
|
10.1
|
1.0
|
C1B
|
G:BCL102
|
3.0
|
10.1
|
1.0
|
C4C
|
G:BCL102
|
3.0
|
10.1
|
1.0
|
C4B
|
G:BCL102
|
3.1
|
10.1
|
1.0
|
C1D
|
G:BCL102
|
3.2
|
10.1
|
1.0
|
C
|
G:MET1
|
3.2
|
11.5
|
1.0
|
C10
|
G:BCL102
|
3.3
|
10.1
|
1.0
|
C11
|
G:BCL102
|
3.3
|
10.1
|
1.0
|
CHB
|
G:BCL102
|
3.3
|
10.1
|
1.0
|
CHA
|
G:BCL102
|
3.4
|
10.1
|
1.0
|
CHC
|
G:BCL102
|
3.4
|
10.1
|
1.0
|
CHD
|
G:BCL102
|
3.5
|
10.1
|
1.0
|
N
|
G:MET1
|
4.0
|
11.5
|
1.0
|
CA
|
G:MET1
|
4.1
|
11.5
|
1.0
|
N
|
G:THR2
|
4.1
|
11.2
|
1.0
|
C3D
|
G:BCL102
|
4.1
|
10.1
|
1.0
|
C12
|
G:BCL102
|
4.2
|
10.1
|
1.0
|
CA
|
G:THR2
|
4.2
|
11.2
|
1.0
|
C3A
|
G:BCL102
|
4.3
|
10.1
|
1.0
|
C2C
|
G:BCL102
|
4.3
|
10.1
|
1.0
|
C2A
|
G:BCL102
|
4.3
|
10.1
|
1.0
|
C3B
|
G:BCL102
|
4.3
|
10.1
|
1.0
|
C3C
|
G:BCL102
|
4.4
|
10.1
|
1.0
|
C2B
|
G:BCL102
|
4.4
|
10.1
|
1.0
|
C2D
|
G:BCL102
|
4.4
|
10.1
|
1.0
|
C8
|
G:BCL102
|
4.5
|
10.1
|
1.0
|
C13
|
G:BCL102
|
4.5
|
10.1
|
1.0
|
CG2
|
G:THR2
|
4.5
|
11.2
|
1.0
|
CB
|
G:MET1
|
4.6
|
11.5
|
1.0
|
C9
|
G:BCL102
|
4.6
|
10.1
|
1.0
|
CBD
|
G:BCL102
|
4.9
|
10.1
|
1.0
|
CB
|
G:THR2
|
5.0
|
11.2
|
1.0
|
|
Magnesium binding site 10 out
of 42 in 8zjw
Go back to
Magnesium Binding Sites List in 8zjw
Magnesium binding site 10 out
of 42 in the Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Photosynthetic LH1' Complex of Roseospirillum Parvum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg101
b:4.7
occ:1.00
|
MG
|
I:BCL101
|
0.0
|
4.7
|
1.0
|
NC
|
I:BCL101
|
2.0
|
4.7
|
1.0
|
NA
|
I:BCL101
|
2.0
|
4.7
|
1.0
|
NE2
|
I:HIS40
|
2.0
|
4.4
|
1.0
|
ND
|
I:BCL101
|
2.1
|
4.7
|
1.0
|
NB
|
I:BCL101
|
2.1
|
4.7
|
1.0
|
C4D
|
I:BCL101
|
3.0
|
4.7
|
1.0
|
C4A
|
I:BCL101
|
3.0
|
4.7
|
1.0
|
CD2
|
I:HIS40
|
3.0
|
4.4
|
1.0
|
C4C
|
I:BCL101
|
3.0
|
4.7
|
1.0
|
C1A
|
I:BCL101
|
3.0
|
4.7
|
1.0
|
C1C
|
I:BCL101
|
3.0
|
4.7
|
1.0
|
CE1
|
I:HIS40
|
3.0
|
4.4
|
1.0
|
C1B
|
I:BCL101
|
3.1
|
4.7
|
1.0
|
C4B
|
I:BCL101
|
3.1
|
4.7
|
1.0
|
C1D
|
I:BCL101
|
3.1
|
4.7
|
1.0
|
CHB
|
I:BCL101
|
3.3
|
4.7
|
1.0
|
CHC
|
I:BCL101
|
3.4
|
4.7
|
1.0
|
CHA
|
I:BCL101
|
3.4
|
4.7
|
1.0
|
CHD
|
I:BCL101
|
3.5
|
4.7
|
1.0
|
CMB
|
G:BCL101
|
4.1
|
5.6
|
1.0
|
CBB
|
G:BCL101
|
4.1
|
5.6
|
1.0
|
ND1
|
I:HIS40
|
4.1
|
4.4
|
1.0
|
CG
|
I:HIS40
|
4.1
|
4.4
|
1.0
|
C3D
|
I:BCL101
|
4.2
|
4.7
|
1.0
|
C2A
|
I:BCL101
|
4.3
|
4.7
|
1.0
|
C3A
|
I:BCL101
|
4.3
|
4.7
|
1.0
|
C3C
|
I:BCL101
|
4.3
|
4.7
|
1.0
|
C2C
|
I:BCL101
|
4.3
|
4.7
|
1.0
|
C2D
|
I:BCL101
|
4.4
|
4.7
|
1.0
|
C3B
|
I:BCL101
|
4.4
|
4.7
|
1.0
|
C2B
|
I:BCL101
|
4.4
|
4.7
|
1.0
|
CAB
|
G:BCL101
|
4.6
|
5.6
|
1.0
|
C2B
|
G:BCL101
|
4.6
|
5.6
|
1.0
|
CMD
|
J:BCL101
|
4.7
|
5.6
|
1.0
|
CG2
|
J:ILE32
|
4.7
|
4.3
|
1.0
|
C11
|
I:BCL101
|
4.7
|
4.7
|
1.0
|
CD1
|
J:ILE32
|
4.8
|
4.3
|
1.0
|
C3B
|
G:BCL101
|
4.9
|
5.6
|
1.0
|
CBD
|
I:BCL101
|
4.9
|
4.7
|
1.0
|
|
Reference:
X.P.Wang,
G.L.Wang,
Y.Fu,
A.Minamino,
M.J.Zou,
F.Ma,
B.Xu,
Z.Y.Wang-Otomo,
Y.Kimura,
M.T.Madigan,
J.Overmann,
L.J.Yu.
Insights Into the Divergence of the Photosynthetic LH1 Complex Obtained From Structural Analysis of the Unusual Photocomplexes of Roseospirillum Parvum. Commun Biol V. 7 1658 2024.
ISSN: ESSN 2399-3642
PubMed: 39702771
DOI: 10.1038/S42003-024-07354-4
Page generated: Sat Feb 8 21:19:51 2025
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