Magnesium in PDB 8zkd: The Crystal Structure of the Ron From Biortus.

Protein crystallography data

The structure of The Crystal Structure of the Ron From Biortus., PDB code: 8zkd was solved by F.Wang, W.Cheng, Z.Yuan, J.Qi, W.Pan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.10 / 2.05
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 98.193, 98.193, 46.873, 90, 90, 90
R / Rfree (%) 17.7 / 23.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of the Ron From Biortus. (pdb code 8zkd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of the Ron From Biortus., PDB code: 8zkd:

Magnesium binding site 1 out of 1 in 8zkd

Go back to Magnesium Binding Sites List in 8zkd
Magnesium binding site 1 out of 1 in the The Crystal Structure of the Ron From Biortus.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of the Ron From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1404

b:48.8
occ:1.00
O3G A:ANP1401 2.0 42.8 1.0
OD2 A:ASP1226 2.0 44.6 1.0
O2A A:ANP1401 2.0 57.1 1.0
OD1 A:ASN1213 2.0 47.8 1.0
O2B A:ANP1401 2.0 46.9 1.0
O A:HOH1557 2.0 47.9 1.0
PB A:ANP1401 3.1 51.2 1.0
CG A:ASN1213 3.1 42.7 1.0
PA A:ANP1401 3.2 53.5 1.0
PG A:ANP1401 3.2 57.6 1.0
CG A:ASP1226 3.2 48.5 1.0
O3A A:ANP1401 3.4 54.7 1.0
N3B A:ANP1401 3.5 50.6 1.0
ND2 A:ASN1213 3.7 43.5 1.0
O5' A:ANP1401 3.9 49.6 1.0
CB A:ASP1226 4.1 47.5 1.0
OD1 A:ASP1226 4.1 49.7 1.0
NZ A:LYS1114 4.2 60.1 1.0
O A:HOH1576 4.2 57.8 1.0
O1G A:ANP1401 4.2 46.7 1.0
O2G A:ANP1401 4.2 48.4 1.0
CB A:ASN1213 4.3 41.2 1.0
O1A A:ANP1401 4.4 59.7 1.0
O1B A:ANP1401 4.4 45.2 1.0
CA A:ASN1213 4.5 41.4 1.0
O A:ARG1212 4.6 51.4 1.0
O A:HOH1541 5.0 55.7 1.0

Reference:

F.Wang, W.Cheng, Z.Yuan, J.Qi, W.Pan. The Crystal Structure of the Ron From Biortus. To Be Published.
Page generated: Sat Oct 5 08:42:36 2024

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