Magnesium in PDB 9b0l: Cryo-Em Structure of Acanthamoeba Polyphaga Mimivirus FANZOR2 Ternary Complex

The structure of Cryo-Em Structure of Acanthamoeba Polyphaga Mimivirus FANZOR2 Ternary Complex also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of Acanthamoeba Polyphaga Mimivirus FANZOR2 Ternary Complex (pdb code 9b0l). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Acanthamoeba Polyphaga Mimivirus FANZOR2 Ternary Complex, PDB code: 9b0l:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Acanthamoeba Polyphaga Mimivirus FANZOR2 Ternary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Acanthamoeba Polyphaga Mimivirus FANZOR2 Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg602 b:103.1 occ:1.00 OD1 P:ASP324 1.9 105.9 1.0 OP1 D:DC3 1.9 124.0 1.0 P D:DC3 2.8 127.3 1.0 O3' D:DC2 2.9 121.9 1.0 CG P:ASP324 3.0 102.4 1.0 OE1 P:GLU467 3.1 117.7 1.0 OD2 P:ASP324 3.5 104.3 1.0 OP2 D:DC3 3.5 122.6 1.0 OG1 P:THR470 3.6 108.6 1.0 OG1 P:THR471 3.6 108.5 1.0 CD P:GLU467 3.8 119.2 1.0 CB P:GLU467 4.1 111.1 1.0 CB P:ALA504 4.1 100.4 1.0 C3' D:DC2 4.1 118.0 1.0 O5' D:DC3 4.2 123.4 1.0 CG P:GLU467 4.2 118.7 1.0 O P:PRO325 4.2 100.4 1.0 CB P:ASP324 4.2 95.8 1.0 C4' D:DC2 4.4 121.0 1.0 C5' D:DC3 4.5 116.7 1.0 OE2 P:GLU467 4.6 121.7 1.0 C5' D:DC2 4.7 126.2 1.0 CB P:THR470 4.8 108.5 1.0 CA P:ASP324 4.8 92.3 1.0 CB P:THR471 4.9 108.7 1.0 CD1 P:ILE508 4.9 96.5 1.0 N P:THR471 5.0 115.3 1.0

R.D.Schargel, M.Z.Qayyum, A.S.Tanwar, R.C.Kalathur, E.H.Kellogg. Structure of FANZOR2 Reveals Insights Into the Evolution of the Tnpb Superfamily. Nat.Struct.Mol.Biol. 2024.
ISSN: ESSN 1545-9985
PubMed: 39354233
DOI: 10.1038/S41594-024-01394-4