Magnesium in PDB 9b27: DIA1 at the Barbed End of F-Actin

The binding sites of Magnesium atom in the DIA1 at the Barbed End of F-Actin (pdb code 9b27). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the DIA1 at the Barbed End of F-Actin, PDB code: 9b27:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the DIA1 at the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of DIA1 at the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:131.2 occ:1.00 O2A A:ADP401 2.1 136.5 1.0 O3A A:ADP401 2.1 136.5 1.0 O2B A:ADP401 2.4 136.5 1.0 PB A:ADP401 2.5 136.5 1.0 O3B A:ADP401 2.5 136.5 1.0 PA A:ADP401 2.6 136.5 1.0 CA A:GLY156 3.1 127.2 1.0 N A:ASP157 3.3 133.0 1.0 O5' A:ADP401 3.6 136.5 1.0 C A:GLY156 3.7 127.2 1.0 O1A A:ADP401 3.8 136.5 1.0 O1B A:ADP401 3.9 136.5 1.0 N A:GLY156 4.4 127.2 1.0 CA A:ASP157 4.5 133.0 1.0 CB A:ASP157 4.5 133.0 1.0 CA A:GLY13 4.7 147.3 1.0 NZ A:LYS18 4.8 141.0 1.0 N A:SER14 4.8 139.5 1.0 C5' A:ADP401 4.9 136.5 1.0 O A:GLY156 4.9 127.2 1.0

Magnesium binding site 2 out of 6 in the DIA1 at the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of DIA1 at the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:125.2 occ:1.00 O3B B:ADP401 2.2 137.7 1.0 O2B B:ADP401 2.3 137.7 1.0 PB B:ADP401 2.5 137.7 1.0 O3A B:ADP401 2.7 137.7 1.0 O2A B:ADP401 2.8 137.7 1.0 PA B:ADP401 3.3 137.7 1.0 CA B:GLY156 3.5 128.2 1.0 O1B B:ADP401 4.0 137.7 1.0 O1A B:ADP401 4.2 137.7 1.0 N B:ASP157 4.2 133.6 1.0 C B:GLY156 4.3 128.2 1.0 CA B:GLY13 4.4 140.2 1.0 NZ B:LYS18 4.5 135.4 1.0 O5' B:ADP401 4.6 137.7 1.0 N B:SER14 4.6 138.5 1.0 N B:GLY156 4.7 128.2 1.0 C5' B:ADP401 4.7 137.7 1.0 CE B:LYS18 5.0 135.4 1.0

Magnesium binding site 3 out of 6 in the DIA1 at the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of DIA1 at the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:140.0 occ:1.00 O3B C:ADP401 2.1 129.3 1.0 O2B C:ADP401 2.1 129.3 1.0 PB C:ADP401 2.5 129.3 1.0 OD2 C:ASP11 2.6 133.9 1.0 OE1 C:GLN137 3.4 137.8 1.0 O3A C:ADP401 3.4 129.3 1.0 CG C:ASP11 3.5 133.9 1.0 OD1 C:ASP11 3.5 133.9 1.0 NE2 C:GLN137 3.7 137.8 1.0 CD C:GLN137 3.8 137.8 1.0 O1B C:ADP401 3.9 129.3 1.0 CE C:LYS18 4.3 127.3 1.0 CA C:GLY13 4.4 135.8 1.0 PA C:ADP401 4.5 129.3 1.0 NZ C:LYS18 4.6 127.3 1.0 CG2 C:VAL339 4.6 124.8 1.0 O2A C:ADP401 4.6 129.3 1.0 CB C:ASP11 4.9 133.9 1.0 CB C:VAL339 4.9 124.8 1.0 OD2 C:ASP154 4.9 130.8 1.0 O1A C:ADP401 5.0 129.3 1.0 N C:GLY13 5.0 135.8 1.0

Magnesium binding site 4 out of 6 in the DIA1 at the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of DIA1 at the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:120.6 occ:1.00 O3A D:ADP401 2.1 130.8 1.0 O3B D:ADP401 2.2 130.8 1.0 O2A D:ADP401 2.4 130.8 1.0 PB D:ADP401 2.5 130.8 1.0 PA D:ADP401 2.7 130.8 1.0 CA D:GLY156 2.7 126.3 1.0 O2B D:ADP401 2.8 130.8 1.0 N D:ASP157 3.2 126.5 1.0 C D:GLY156 3.4 126.3 1.0 O5' D:ADP401 3.6 130.8 1.0 O1B D:ADP401 3.9 130.8 1.0 O1A D:ADP401 4.0 130.8 1.0 N D:GLY156 4.0 126.3 1.0 O D:GLY156 4.5 126.3 1.0 CA D:ASP157 4.5 126.5 1.0 C5' D:ADP401 4.6 130.8 1.0 N D:SER14 4.6 129.8 1.0 CB D:ASP157 4.6 126.5 1.0 N D:GLY15 4.7 128.5 1.0 CA D:GLY13 4.8 127.1 1.0 C D:SER155 4.9 124.4 1.0 O D:SER155 5.0 124.4 1.0

Magnesium binding site 5 out of 6 in the DIA1 at the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of DIA1 at the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:120.4 occ:1.00 O2A E:ADP401 2.1 141.2 1.0 O3A E:ADP401 2.3 141.2 1.0 O3B E:ADP401 2.4 141.2 1.0 O2B E:ADP401 2.4 141.2 1.0 PB E:ADP401 2.5 141.2 1.0 PA E:ADP401 2.7 141.2 1.0 CA E:GLY156 3.0 138.3 1.0 N E:ASP157 3.6 137.8 1.0 C E:GLY156 3.6 138.3 1.0 O5' E:ADP401 3.7 141.2 1.0 O1A E:ADP401 3.8 141.2 1.0 O1B E:ADP401 4.0 141.2 1.0 N E:GLY156 4.3 138.3 1.0 O E:GLY156 4.6 138.3 1.0 CA E:GLY13 4.7 139.2 1.0 N E:SER14 4.7 143.0 1.0 NZ E:LYS18 4.8 136.3 1.0 CA E:ASP157 4.8 137.8 1.0 CB E:ASP157 4.9 137.8 1.0 C5' E:ADP401 4.9 141.2 1.0

Magnesium binding site 6 out of 6 in the DIA1 at the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of DIA1 at the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:147.0 occ:1.00 O3B F:ADP401 2.1 152.7 1.0 O2B F:ADP401 2.1 152.7 1.0 PB F:ADP401 2.5 152.7 1.0 O3A F:ADP401 3.3 152.7 1.0 CA F:GLY13 3.6 150.0 1.0 OD2 F:ASP11 3.7 152.2 1.0 O1B F:ADP401 3.9 152.7 1.0 OE1 F:GLN137 3.9 171.2 1.0 O2A F:ADP401 4.2 152.7 1.0 PA F:ADP401 4.3 152.7 1.0 N F:SER14 4.3 153.2 1.0 NE2 F:GLN137 4.3 171.2 1.0 OD1 F:ASP11 4.4 152.2 1.0 CA F:GLY156 4.4 161.1 1.0 CG F:ASP11 4.4 152.2 1.0 C F:GLY13 4.5 150.0 1.0 CD F:GLN137 4.5 171.2 1.0 N F:GLY13 4.5 150.0 1.0 O1A F:ADP401 4.8 152.7 1.0 NZ F:LYS18 4.9 146.0 1.0

N.J.Palmer, K.R.Barrie, R.Dominguez. Mechanisms of Actin Filament Severing and Elongation By Formins To Be Published.