Magnesium in PDB 9bam: Surface Glycan-Binding Protein A (Sgbp-A, Susd-Like) From A Mixed- Linkage Beta-Glucan Utilization Locus in Segatella Copri

The structure of Surface Glycan-Binding Protein A (Sgbp-A, Susd-Like) From A Mixed- Linkage Beta-Glucan Utilization Locus in Segatella Copri, PDB code: 9bam was solved by R.L.Cordeiro, B.Golisch, H.Brumer, F.Van Petegem, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.56 / 2.05
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	68.877, 76.849, 99.918, 90, 90, 90
R / Rfree (%)	18.5 / 23.3

The binding sites of Magnesium atom in the Surface Glycan-Binding Protein A (Sgbp-A, Susd-Like) From A Mixed- Linkage Beta-Glucan Utilization Locus in Segatella Copri (pdb code 9bam). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Surface Glycan-Binding Protein A (Sgbp-A, Susd-Like) From A Mixed- Linkage Beta-Glucan Utilization Locus in Segatella Copri, PDB code: 9bam:

Magnesium binding site 1 out of 1 in the Surface Glycan-Binding Protein A (Sgbp-A, Susd-Like) From A Mixed- Linkage Beta-Glucan Utilization Locus in Segatella Copri


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Surface Glycan-Binding Protein A (Sgbp-A, Susd-Like) From A Mixed- Linkage Beta-Glucan Utilization Locus in Segatella Copri within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:22.9 occ:1.00 O A:SER577 2.0 26.5 1.0 OD1 A:ASP575 2.1 26.7 1.0 O A:HOH777 2.1 21.0 1.0 OD1 A:ASP510 2.1 25.3 1.0 O A:ARG507 2.2 25.9 1.0 O A:HOH811 2.3 26.9 1.0 CG A:ASP575 3.1 27.1 1.0 CG A:ASP510 3.2 27.7 1.0 C A:ARG507 3.2 22.2 1.0 C A:SER577 3.2 30.5 1.0 OD2 A:ASP575 3.5 28.1 1.0 OD2 A:ASP510 3.7 27.3 1.0 CA A:ARG507 3.9 23.7 1.0 N A:SER577 3.9 27.9 1.0 N A:VAL579 4.1 27.3 1.0 C A:ASP578 4.1 28.8 1.0 N A:ASP578 4.2 26.6 1.0 CA A:SER577 4.2 27.2 1.0 CA A:ASP578 4.2 30.9 1.0 N A:ARG508 4.3 21.9 1.0 O A:HOH828 4.3 29.0 1.0 CG2 A:VAL579 4.3 26.6 1.0 O A:ARG508 4.3 24.0 1.0 CB A:ASP575 4.3 22.1 1.0 CB A:ASP510 4.5 25.8 1.0 CA A:ARG508 4.5 22.3 1.0 C A:ARG508 4.5 25.5 1.0 CB A:ARG507 4.5 23.0 1.0 O A:ASP578 4.6 30.0 1.0 CA A:ASP575 4.6 23.8 1.0 N A:LYS576 4.6 25.7 1.0 N A:ASP510 4.7 22.1 1.0 CA A:ASP510 4.7 24.9 1.0 C A:ASP575 4.7 26.1 1.0 O A:HOH779 4.7 24.4 1.0 CA A:VAL579 4.7 26.5 1.0 O A:MET506 4.8 26.4 1.0 CB A:SER577 4.9 26.9 1.0 CD A:LYS571 4.9 25.1 1.0

B.Golisch, R.L.Cordeiro, A.S.C.Fraser, J.Briggs, W.A.Stewart, F.Van Petegem, H.Brumer. The Molecular Basis of Cereal Mixed-Linkage Beta-Glucan Utilization By the Human Gut Bacterium Segatella Copri. J.Biol.Chem. V. 300 07625 2024.
ISSN: ESSN 1083-351X
PubMed: 39122003
DOI: 10.1016/J.JBC.2024.107625