Magnesium in PDB 9bgk: Structure of V.Cholera Ddmde (2D:1E) in Complex with Dna

The binding sites of Magnesium atom in the Structure of V.Cholera Ddmde (2D:1E) in Complex with Dna (pdb code 9bgk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of V.Cholera Ddmde (2D:1E) in Complex with Dna, PDB code: 9bgk:

Magnesium binding site 1 out of 1 in the Structure of V.Cholera Ddmde (2D:1E) in Complex with Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of V.Cholera Ddmde (2D:1E) in Complex with Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:61.1 occ:1.00 OP2 A:DA1 2.3 80.4 1.0 OP1 A:DG3 2.4 53.5 1.0 OE2 E:GLU401 3.1 67.9 1.0 P A:DA1 3.6 78.9 1.0 P A:DG3 3.8 52.4 1.0 OE1 E:GLU678 3.9 69.1 1.0 CD E:GLU401 4.3 67.3 1.0 OP1 A:DA1 4.5 70.5 1.0 OP2 A:DG3 4.6 44.6 1.0 O5' A:DG3 4.7 53.8 1.0 O3' A:DG2 4.7 41.7 1.0 NZ E:LYS405 4.7 53.2 1.0 O5' A:DA1 4.7 59.2 1.0 OE1 E:GLU401 4.9 65.5 1.0 CD E:GLU678 4.9 59.9 1.0

X.Y.Yang, Z.Shen, C.Wang, K.Nakanishi, T.M.Fu. Ddmde Eliminates Plasmid Invasion By Dna-Guided Dna Targeting. Cell V. 187 5253 2024.
ISSN: ISSN 1097-4172
PubMed: 39173632
DOI: 10.1016/J.CELL.2024.07.028