Magnesium in PDB 9cay: Ternary Structure of Plasmodium Falciparum Apicoplast Dna Polymerase (Exo-Minus)

All present enzymatic activity of Ternary Structure of Plasmodium Falciparum Apicoplast Dna Polymerase (Exo-Minus):
2.7.7.7;

The binding sites of Magnesium atom in the Ternary Structure of Plasmodium Falciparum Apicoplast Dna Polymerase (Exo-Minus) (pdb code 9cay). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Ternary Structure of Plasmodium Falciparum Apicoplast Dna Polymerase (Exo-Minus), PDB code: 9cay:

Magnesium binding site 1 out of 1 in the Ternary Structure of Plasmodium Falciparum Apicoplast Dna Polymerase (Exo-Minus)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ternary Structure of Plasmodium Falciparum Apicoplast Dna Polymerase (Exo-Minus) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:50.5 occ:0.50 OD1 A:ASP410 2.2 57.5 1.0 O3G A:DGT702 2.5 46.7 1.0 OD2 A:ASP579 2.6 52.6 1.0 O2A A:DGT702 2.7 51.8 1.0 O A:PHE411 2.8 55.6 1.0 O2B A:DGT702 2.8 50.5 1.0 CG A:ASP410 3.1 57.6 1.0 OD2 A:ASP410 3.3 57.1 1.0 O5' A:DGT702 3.4 43.3 1.0 CG A:ASP579 3.4 54.5 1.0 PA A:DGT702 3.6 45.8 1.0 OD1 A:ASP579 3.6 57.2 1.0 C A:PHE411 3.8 55.1 1.0 PB A:DGT702 3.9 44.5 1.0 PG A:DGT702 3.9 48.6 1.0 N A:PHE411 4.0 58.3 1.0 O3A A:DGT702 4.0 46.7 1.0 C5' A:DGT702 4.2 40.6 1.0 CA A:PHE411 4.3 55.0 1.0 O3B A:DGT702 4.3 43.8 1.0 CB A:PHE411 4.4 51.0 1.0 CB A:ASP410 4.5 57.5 1.0 C A:ASP410 4.5 61.0 1.0 O1G A:DGT702 4.6 52.2 1.0 CB A:ASP579 4.8 47.6 1.0 CA A:ASP410 4.9 58.7 1.0 CG2 A:ILE414 4.9 53.3 1.0 CG A:GLU580 4.9 57.0 1.0 OE2 A:GLU580 4.9 62.7 1.0 O1A A:DGT702 5.0 43.3 1.0 O2G A:DGT702 5.0 51.1 1.0

C.-Y.Lo, A.Ung, S.W.Nelson, Y.Gao. Cryo-Em Structures of Binary and Ternary Complexes of the Plasmodium Falciparum Apicoplast Dna Polymerase To Be Published.