Magnesium in PDB 9cew: Spizellomyces Punctatus Fanzor (Spufz) State 3

The structure of Spizellomyces Punctatus Fanzor (Spufz) State 3 also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Spizellomyces Punctatus Fanzor (Spufz) State 3 (pdb code 9cew). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Spizellomyces Punctatus Fanzor (Spufz) State 3, PDB code: 9cew:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Spizellomyces Punctatus Fanzor (Spufz) State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Spizellomyces Punctatus Fanzor (Spufz) State 3 within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg701 b:30.0 occ:1.00 OP1 Y:DT11 1.9 20.0 1.0 OD1 P:ASN384 2.0 81.1 1.0 OD2 P:ASP382 2.2 89.2 1.0 OD1 P:ASP605 2.4 89.3 1.0 HD22 P:ASN384 2.7 81.1 1.0 HG2 P:ARG604 2.8 90.1 1.0 CG P:ASN384 2.9 81.1 1.0 P Y:DT11 3.1 20.0 1.0 ND2 P:ASN384 3.2 81.1 1.0 HA P:ASP605 3.2 89.3 1.0 CG P:ASP382 3.3 89.2 1.0 H5'' Y:DT11 3.6 20.0 1.0 CG P:ASP605 3.6 89.3 1.0 OP2 Y:DT11 3.6 20.0 1.0 HD3 P:ARG604 3.7 90.1 1.0 OD1 P:ASP382 3.7 89.2 1.0 O5' Y:DT11 3.7 20.0 1.0 CG P:ARG604 3.8 90.1 1.0 MG P:MG702 3.9 30.0 1.0 CA P:ASP605 4.0 89.3 1.0 HD21 P:ASN384 4.0 81.1 1.0 HG P:SER544 4.1 86.6 1.0 CD P:ARG604 4.1 90.1 1.0 HG3 P:ARG604 4.2 90.1 1.0 C5' Y:DT11 4.2 20.0 1.0 HD2 P:ARG604 4.2 90.1 1.0 N P:ASP605 4.2 89.3 1.0 HB2 P:SER608 4.2 91.8 1.0 HB3 P:SER608 4.2 91.8 1.0 O P:PRO383 4.2 86.4 1.0 CB P:ASP605 4.3 89.3 1.0 CB P:ASN384 4.3 81.1 1.0 HG P:SER608 4.3 91.8 1.0 O3' Y:DT10 4.4 20.0 1.0 HB3 P:ASP605 4.4 89.3 1.0 HB3 P:ASN384 4.4 81.1 1.0 C P:ARG604 4.4 90.1 1.0 O P:ARG604 4.5 90.1 1.0 H P:ASP605 4.5 89.3 1.0 HB3 P:ASP382 4.5 89.2 1.0 OD2 P:ASP605 4.5 89.3 1.0 CB P:ASP382 4.6 89.2 1.0 OG P:SER544 4.6 86.6 1.0 CB P:SER608 4.6 91.8 1.0 H5' Y:DT11 4.7 20.0 1.0 HB3 P:ARG604 4.7 90.1 1.0 O P:ASP382 4.7 89.2 1.0 H3' Y:DT11 4.8 20.0 1.0 CB P:ARG604 4.8 90.1 1.0 OP2 Y:DT12 4.8 20.0 1.0 HB2 P:ASN384 4.9 81.1 1.0 OG P:SER608 4.9 91.8 1.0 HA P:ASN384 4.9 81.1 1.0 HH11 P:ARG604 4.9 90.1 1.0

Magnesium binding site 2 out of 2 in the Spizellomyces Punctatus Fanzor (Spufz) State 3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Spizellomyces Punctatus Fanzor (Spufz) State 3 within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg702 b:30.0 occ:1.00 OD1 P:ASP382 2.0 89.2 1.0 OE1 P:GLU540 2.2 85.1 1.0 OP1 Y:DT11 2.4 20.0 1.0 O3' Y:DT10 2.5 20.0 1.0 HG P:SER608 2.8 91.8 1.0 CG P:ASP382 3.0 89.2 1.0 P Y:DT11 3.0 20.0 1.0 CD P:GLU540 3.2 85.1 1.0 H4' Y:DT10 3.3 20.0 1.0 OD2 P:ASP382 3.4 89.2 1.0 OG P:SER608 3.6 91.8 1.0 HG P:SER544 3.7 86.6 1.0 C3' Y:DT10 3.7 20.0 1.0 OE2 P:GLU540 3.8 85.1 1.0 HB3 P:GLU540 3.8 85.1 1.0 MG P:MG701 3.9 30.0 1.0 H5' Y:DT11 3.9 20.0 1.0 C4' Y:DT10 4.0 20.0 1.0 OP2 Y:DT11 4.0 20.0 1.0 O P:PRO383 4.0 86.4 1.0 OG P:SER544 4.1 86.6 1.0 HD2 P:PRO383 4.1 86.4 1.0 HE3 P:MET612 4.1 94.5 1.0 H5'' Y:DT11 4.1 20.0 1.0 HE2 P:MET612 4.1 94.5 1.0 O5' Y:DT11 4.1 20.0 1.0 CG P:GLU540 4.2 85.1 1.0 H5'' Y:DT10 4.2 20.0 1.0 H3' Y:DT10 4.2 20.0 1.0 HG2 P:GLU540 4.2 85.1 1.0 CB P:ASP382 4.3 89.2 1.0 C5' Y:DT11 4.3 20.0 1.0 HA P:ASP382 4.3 89.2 1.0 HB2 P:SER608 4.4 91.8 1.0 CE P:MET612 4.5 94.5 1.0 CB P:GLU540 4.5 85.1 1.0 OG1 P:THR543 4.5 87.5 1.0 HB2 P:ASP382 4.5 89.2 1.0 CB P:SER608 4.5 91.8 1.0 HE1 P:MET612 4.6 94.5 1.0 H2'' Y:DT10 4.6 20.0 1.0 HB3 P:SER608 4.6 91.8 1.0 C5' Y:DT10 4.7 20.0 1.0 HB3 P:TRP506 4.7 65.4 1.0 CA P:ASP382 4.7 89.2 1.0 HG2 P:PRO383 4.7 86.4 1.0 OD1 P:ASN384 4.7 81.1 1.0 C2' Y:DT10 4.8 20.0 1.0 C P:ASP382 4.8 89.2 1.0 HB2 P:TRP506 4.8 65.4 1.0 CD P:PRO383 4.8 86.4 1.0 HB2 P:GLU540 4.8 85.1 1.0 N P:PRO383 4.9 86.4 1.0 HG1 P:THR543 4.9 87.5 1.0 HD22 P:ASN384 5.0 81.1 1.0 HB3 P:ASP382 5.0 89.2 1.0

P.Xu, M.Saito, G.Faure, S.Maguire, S.Chau-Duy-Tam Vo, M.E.Wilkinson, H.Kuang, B.Wang, W.J.Rice, R.K.Macrae, F.Zhang. Structural Insights Into the Diversity and Dna Cleavage Mechanism of Fanzor. Cell 2024.
ISSN: ISSN 1097-4172
PubMed: 39208796
DOI: 10.1016/J.CELL.2024.07.050