Magnesium in PDB 9cex: Spizellomyces Punctatus Fanzor (Spufz) State 4

The structure of Spizellomyces Punctatus Fanzor (Spufz) State 4 also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Spizellomyces Punctatus Fanzor (Spufz) State 4 (pdb code 9cex). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Spizellomyces Punctatus Fanzor (Spufz) State 4, PDB code: 9cex:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Spizellomyces Punctatus Fanzor (Spufz) State 4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Spizellomyces Punctatus Fanzor (Spufz) State 4 within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg702 b:30.0 occ:1.00 O P:HOH802 1.9 30.0 1.0 OD1 P:ASN384 1.9 81.1 1.0 OD2 P:ASP382 2.0 89.2 1.0 H2 P:HOH802 2.0 30.0 1.0 OP1 B:DT1 2.0 20.0 1.0 H1 P:HOH802 2.5 30.0 1.0 HD22 P:ASN384 2.7 81.1 1.0 CG P:ASP382 2.8 89.2 1.0 CG P:ASN384 2.8 81.1 1.0 OD1 P:ASP382 2.9 89.2 1.0 MG P:MG703 3.0 30.0 1.0 ND2 P:ASN384 3.1 81.1 1.0 OD1 P:ASP605 3.2 89.3 1.0 P B:DT1 3.3 20.0 1.0 O P:PRO383 3.5 86.4 1.0 H5'' B:DT1 3.5 20.0 1.0 HA P:ASP605 3.8 89.3 1.0 HD21 P:ASN384 3.9 81.1 1.0 HG2 P:ARG604 4.0 90.1 1.0 H1 P:HOH801 4.0 30.0 1.0 HG P:SER544 4.1 86.6 1.0 HG P:SER608 4.1 91.8 1.0 CB P:ASN384 4.2 81.1 1.0 CB P:ASP382 4.2 89.2 1.0 OP2 B:DT1 4.2 20.0 1.0 O P:HOH801 4.2 30.0 1.0 CG P:ASP605 4.3 89.3 1.0 C5' B:DT1 4.3 20.0 1.0 O5' B:DT1 4.3 20.0 1.0 C P:PRO383 4.4 86.4 1.0 HB3 P:ASP382 4.4 89.2 1.0 HB3 P:SER608 4.4 91.8 1.0 HB3 P:ASN384 4.4 81.1 1.0 H3' B:DT1 4.5 20.0 1.0 HB2 P:SER608 4.5 91.8 1.0 HD3 P:ARG604 4.5 90.1 1.0 HA P:ASN384 4.5 81.1 1.0 OP1 B:DT2 4.6 20.0 1.0 CA P:ASP605 4.6 89.3 1.0 OG P:SER544 4.7 86.6 1.0 OE2 P:GLU540 4.7 85.1 1.0 HB2 P:ASP382 4.7 89.2 1.0 CB P:SER608 4.8 91.8 1.0 OG P:SER608 4.8 91.8 1.0 CA P:ASN384 4.8 81.1 1.0 HB2 P:ASN384 4.8 81.1 1.0 CG P:ARG604 4.8 90.1 1.0 HB3 P:ASP605 4.9 89.3 1.0 CB P:ASP605 4.9 89.3 1.0 C P:ASP382 4.9 89.2 1.0 H5' B:DT1 4.9 20.0 1.0 N P:ASN384 4.9 81.1 1.0 N P:PRO383 5.0 86.4 1.0 OP2 B:DT2 5.0 20.0 1.0

Magnesium binding site 2 out of 2 in the Spizellomyces Punctatus Fanzor (Spufz) State 4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Spizellomyces Punctatus Fanzor (Spufz) State 4 within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg703 b:30.0 occ:1.00 OP1 B:DT1 1.9 20.0 1.0 OE2 P:GLU540 1.9 85.1 1.0 OD1 P:ASP382 2.0 89.2 1.0 H1 P:HOH801 2.0 30.0 1.0 O P:HOH801 2.4 30.0 1.0 HG P:SER608 2.7 91.8 1.0 CD P:GLU540 2.8 85.1 1.0 H2 P:HOH801 2.9 30.0 1.0 P B:DT1 2.9 20.0 1.0 MG P:MG702 3.0 30.0 1.0 OP2 B:DT1 3.0 20.0 1.0 CG P:ASP382 3.0 89.2 1.0 HG2 P:GLU540 3.4 85.1 1.0 OD2 P:ASP382 3.4 89.2 1.0 O P:HOH802 3.5 30.0 1.0 CG P:GLU540 3.6 85.1 1.0 OG P:SER608 3.6 91.8 1.0 OE1 P:GLU540 3.6 85.1 1.0 H1 P:HOH802 3.7 30.0 1.0 H5'' B:DT1 3.7 20.0 1.0 HG P:SER544 3.7 86.6 1.0 O5' B:DT1 3.7 20.0 1.0 HG3 P:GLU540 3.7 85.1 1.0 HD2 P:PRO383 3.8 86.4 1.0 HE2 P:MET612 4.0 94.5 1.0 O P:PRO383 4.1 86.4 1.0 OG P:SER544 4.1 86.6 1.0 C5' B:DT1 4.1 20.0 1.0 H2 P:HOH802 4.2 30.0 1.0 HB2 P:SER608 4.3 91.8 1.0 H5' B:DT1 4.3 20.0 1.0 CB P:ASP382 4.3 89.2 1.0 HE1 P:MET612 4.4 94.5 1.0 CB P:SER608 4.4 91.8 1.0 HA P:ASP382 4.4 89.2 1.0 OG1 P:THR543 4.4 87.5 1.0 HB3 P:SER608 4.5 91.8 1.0 HB2 P:ASP382 4.5 89.2 1.0 OD1 P:ASN384 4.6 81.1 1.0 CE P:MET612 4.6 94.5 1.0 CD P:PRO383 4.7 86.4 1.0 HB3 P:TRP506 4.7 65.4 1.0 HG2 P:PRO383 4.8 86.4 1.0 HG1 P:THR543 4.8 87.5 1.0 CA P:ASP382 4.8 89.2 1.0 N P:PRO383 4.9 86.4 1.0 HD22 P:ASN384 4.9 81.1 1.0 CB P:GLU540 5.0 85.1 1.0 HE3 P:MET612 5.0 94.5 1.0

P.Xu, M.Saito, G.Faure, S.Maguire, S.Chau-Duy-Tam Vo, M.E.Wilkinson, H.Kuang, B.Wang, W.J.Rice, R.K.Macrae, F.Zhang. Structural Insights Into the Diversity and Dna Cleavage Mechanism of Fanzor. Cell 2024.
ISSN: ISSN 1097-4172
PubMed: 39208796
DOI: 10.1016/J.CELL.2024.07.050