Magnesium in PDB 9cez: Spizellomyces Punctatus Fanzor (Spufz) State 6

The structure of Spizellomyces Punctatus Fanzor (Spufz) State 6 also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Spizellomyces Punctatus Fanzor (Spufz) State 6 (pdb code 9cez). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Spizellomyces Punctatus Fanzor (Spufz) State 6, PDB code: 9cez:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Spizellomyces Punctatus Fanzor (Spufz) State 6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Spizellomyces Punctatus Fanzor (Spufz) State 6 within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg701 b:101.4 occ:1.00 OD1 P:ASN385 2.0 84.6 1.0 O P:HOH802 2.0 90.0 1.0 H2 P:HOH802 2.4 89.3 1.0 H1 P:HOH802 2.4 84.0 1.0 HG2 P:ARG605 2.5 88.5 1.0 HD3 P:ARG605 2.8 100.1 1.0 CG P:ASN385 3.0 76.4 1.0 OD1 P:ASP606 3.0 87.2 1.0 HD2 P:ARG605 3.2 90.0 1.0 CD P:ARG605 3.2 91.0 1.0 CG P:ARG605 3.3 88.0 1.0 HD22 P:ASN385 3.3 71.5 1.0 OD2 P:ASP383 3.3 74.3 1.0 ND2 P:ASN385 3.6 75.2 1.0 HG3 P:ARG605 3.9 88.4 1.0 HA P:ASP606 4.0 75.1 1.0 HB3 P:ASN385 4.2 69.6 1.0 HB3 P:ARG605 4.2 81.3 1.0 CB P:ASN385 4.2 68.2 1.0 CG P:ASP606 4.3 84.6 1.0 H2 P:HOH801 4.3 84.9 1.0 HH11 P:ARG605 4.3 108.2 1.0 CB P:ARG605 4.4 83.1 1.0 HD21 P:ASN385 4.4 70.2 1.0 CG P:ASP383 4.4 73.3 1.0 N P:ASP606 4.5 71.5 1.0 C P:ARG605 4.6 73.2 1.0 MG P:MG702 4.6 64.2 1.0 CA P:ASP606 4.6 75.0 1.0 NE P:ARG605 4.7 95.4 1.0 HB2 P:SER609 4.7 73.7 1.0 O P:ARG605 4.7 75.8 1.0 H P:ASP606 4.7 74.7 1.0 OD1 P:ASP383 4.8 77.3 1.0 O P:PRO384 4.8 74.5 1.0 HB2 P:ASN385 4.8 68.9 1.0 HA P:ASN385 5.0 65.7 1.0 O P:HOH801 5.0 79.3 1.0

Magnesium binding site 2 out of 2 in the Spizellomyces Punctatus Fanzor (Spufz) State 6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Spizellomyces Punctatus Fanzor (Spufz) State 6 within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg702 b:64.2 occ:1.00 O P:HOH801 1.9 79.3 1.0 H1 P:HOH801 2.1 86.9 1.0 OE1 P:GLU541 2.2 107.1 1.0 H2 P:HOH801 2.2 84.9 1.0 CD P:GLU541 2.9 99.5 1.0 OD1 P:ASP383 2.9 77.3 1.0 OE2 P:GLU541 3.4 89.1 1.0 HB3 P:GLU541 3.5 91.8 1.0 CG P:ASP383 3.8 73.3 1.0 H2 P:HOH802 3.9 89.3 1.0 O P:PRO384 3.9 74.5 1.0 CG P:GLU541 3.9 93.0 1.0 OD2 P:ASP383 4.0 74.3 1.0 O P:HOH802 4.0 90.0 1.0 HG2 P:GLU541 4.0 87.8 1.0 CB P:GLU541 4.1 88.3 1.0 HB3 P:TRP507 4.3 89.4 1.0 HB2 P:GLU541 4.3 91.2 1.0 HB2 P:TRP507 4.4 96.0 1.0 OD1 P:ASN385 4.5 84.6 1.0 MG P:MG701 4.6 101.4 1.0 OG P:SER609 4.6 83.9 1.0 HD2 P:PRO384 4.6 61.6 1.0 HG2 P:PRO384 4.7 62.3 1.0 HG3 P:GLU541 4.7 86.1 1.0 CB P:TRP507 4.8 89.2 1.0 H1 P:HOH802 4.8 84.0 1.0 HE2 P:MET613 4.9 74.5 1.0 HE1 P:MET613 4.9 72.5 1.0

P.Xu, M.Saito, G.Faure, S.Maguire, S.Chau-Duy-Tam Vo, M.E.Wilkinson, H.Kuang, B.Wang, W.J.Rice, R.K.Macrae, F.Zhang. Structural Insights Into the Diversity and Dna Cleavage Mechanism of Fanzor. Cell 2024.
ISSN: ISSN 1097-4172
PubMed: 39208796
DOI: 10.1016/J.CELL.2024.07.050