Magnesium in PDB 9der: Cryo-Em Structures of Full-Length Integrin ALPHAIIBBETA3 in Native Lipids Complexed with Tirofiban

The structure of Cryo-Em Structures of Full-Length Integrin ALPHAIIBBETA3 in Native Lipids Complexed with Tirofiban also contains other interesting chemical elements:

Calcium

(Ca)

6 atoms

The binding sites of Magnesium atom in the Cryo-Em Structures of Full-Length Integrin ALPHAIIBBETA3 in Native Lipids Complexed with Tirofiban (pdb code 9der). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structures of Full-Length Integrin ALPHAIIBBETA3 in Native Lipids Complexed with Tirofiban, PDB code: 9der:

Magnesium binding site 1 out of 1 in the Cryo-Em Structures of Full-Length Integrin ALPHAIIBBETA3 in Native Lipids Complexed with Tirofiban


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structures of Full-Length Integrin ALPHAIIBBETA3 in Native Lipids Complexed with Tirofiban within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2001 b:163.0 occ:1.00 HB2 B:SER121 1.9 220.1 1.0 O B:HOH2101 2.1 207.8 1.0 OE2 B:GLU220 2.2 233.8 1.0 O B:HOH2102 2.3 195.2 1.0 CB B:SER121 2.4 220.1 1.0 OG B:SER121 2.4 220.1 1.0 OG B:SER123 2.6 197.3 1.0 HB3 B:SER121 2.6 220.1 1.0 OXT B:AGG2004 2.7 216.4 1.0 HD21 B:ASN215 2.9 218.6 1.0 CD B:GLU220 3.1 233.8 1.0 HG3 B:GLU220 3.2 233.8 1.0 H B:SER123 3.3 197.3 1.0 CG B:GLU220 3.5 233.8 1.0 HB1 B:AGG2004 3.5 216.4 1.0 HG2 B:GLU220 3.5 233.8 1.0 C B:AGG2004 3.7 216.4 1.0 ND2 B:ASN215 3.7 218.6 1.0 CB B:SER123 3.8 197.3 1.0 H B:MET124 3.8 229.3 1.0 CA B:SER121 3.8 220.1 1.0 O B:ALA218 3.9 225.1 1.0 HB3 B:SER123 3.9 197.3 1.0 N B:SER123 4.1 197.3 1.0 OD1 B:ASN215 4.1 218.6 1.0 H B:TYR122 4.2 197.7 1.0 HB3 B:ALA252 4.2 229.9 1.0 HB2 B:AGG2004 4.2 216.4 1.0 OE1 B:GLU220 4.2 233.8 1.0 HA B:SER121 4.2 220.1 1.0 CB B:AGG2004 4.2 216.4 1.0 HA B:ALA218 4.3 225.1 1.0 C B:SER121 4.3 220.1 1.0 HD22 B:ASN215 4.3 218.6 1.0 N B:TYR122 4.3 197.7 1.0 CG B:ASN215 4.4 218.6 1.0 O B:AGG2004 4.4 216.4 1.0 CA B:SER123 4.5 197.3 1.0 HB2 B:SER123 4.5 197.3 1.0 N B:MET124 4.5 229.3 1.0 CA B:AGG2004 4.6 216.4 1.0 H B:SER121 4.7 220.1 1.0 OD1 B:ASP251 4.7 229.9 1.0 N B:SER121 4.8 220.1 1.0 HB2 B:MET124 4.8 229.3 1.0 C B:ALA218 4.9 225.1 1.0 OD2 B:ASP119 4.9 244.2 1.0 OD1 B:ASP119 4.9 244.2 1.0 HB2 B:ALA252 4.9 229.9 1.0 CB B:ALA252 5.0 229.9 1.0 CB B:GLU220 5.0 233.8 1.0

B.D.Adair, C.O.Field, J.L.Alonso, J.P.Xiong, S.X.Deng, H.S.Ahn, E.Mashin, C.B.Clish, J.Van Agthoven, M.Yeager, Y.Guo, D.A.Tess, D.W.Landry, M.Poncz, M.A.Arnaout. Platelet Integrin Alpha Iib Beta 3 Plays A Key Role in A Venous Thrombogenesis Mouse Model. Nat Commun V. 15 8612 2024.
ISSN: ESSN 2041-1723
PubMed: 39366965
DOI: 10.1038/S41467-024-52869-3