Magnesium in PDB 9dr1: E. Coli Rna Polymerase Consensus Volume with A Bound Fluoride Riboswitch in the Ligand-Bound State

All present enzymatic activity of E. Coli Rna Polymerase Consensus Volume with A Bound Fluoride Riboswitch in the Ligand-Bound State:
2.7.7.6;

The binding sites of Magnesium atom in the E. Coli Rna Polymerase Consensus Volume with A Bound Fluoride Riboswitch in the Ligand-Bound State (pdb code 9dr1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the E. Coli Rna Polymerase Consensus Volume with A Bound Fluoride Riboswitch in the Ligand-Bound State, PDB code: 9dr1:

Magnesium binding site 1 out of 1 in the E. Coli Rna Polymerase Consensus Volume with A Bound Fluoride Riboswitch in the Ligand-Bound State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of E. Coli Rna Polymerase Consensus Volume with A Bound Fluoride Riboswitch in the Ligand-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg1401 b:32.6 occ:1.00 OD2 J:ASP464 2.1 29.3 1.0 OD1 J:ASP464 2.1 29.3 1.0 OD1 J:ASP462 2.1 30.3 1.0 O3' R:U67 2.1 35.2 1.0 CG J:ASP464 2.3 29.3 1.0 CB J:ASP460 3.2 33.3 1.0 CG J:ASP462 3.2 30.3 1.0 C3' R:U67 3.4 35.2 1.0 OD2 J:ASP462 3.7 30.3 1.0 C4' R:U67 3.7 35.2 1.0 CB J:ASP464 3.8 29.3 1.0 O2' R:U67 3.8 35.2 1.0 O J:ASP462 3.8 30.3 1.0 N J:ASP460 4.0 33.3 1.0 CA J:ASP460 4.0 33.3 1.0 C2' R:U67 4.2 35.2 1.0 N J:ASP462 4.2 30.3 1.0 C5' R:U67 4.3 35.2 1.0 CA J:ASP464 4.4 29.3 1.0 C J:ASP460 4.4 33.3 1.0 C J:ASP462 4.4 30.3 1.0 N J:ASP464 4.4 29.3 1.0 CG J:ASP460 4.4 33.3 1.0 CB J:ASP462 4.5 30.3 1.0 N J:PHE461 4.5 41.3 1.0 CA J:ASP462 4.6 30.3 1.0 OD2 J:ASP460 4.7 33.3 1.0

J.C.Porta, E.Ellinger, Y.Liu, A.Chauvier, N.G.Walter. Structural Basis of Rna-Mediated Regulation of Transcriptional Pausing. To Be Published.