Magnesium in PDB 9dua: Crystal Structure of Adp-Ribose Diphosphatase From Klebsiella Pneumoniae (Gmp Bound)

All present enzymatic activity of Crystal Structure of Adp-Ribose Diphosphatase From Klebsiella Pneumoniae (Gmp Bound):
3.6.1.13;

The structure of Crystal Structure of Adp-Ribose Diphosphatase From Klebsiella Pneumoniae (Gmp Bound), PDB code: 9dua was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	60.41 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	57.545, 80.309, 91.667, 90, 90, 90
R / Rfree (%)	15.8 / 18.8

The binding sites of Magnesium atom in the Crystal Structure of Adp-Ribose Diphosphatase From Klebsiella Pneumoniae (Gmp Bound) (pdb code 9dua). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Adp-Ribose Diphosphatase From Klebsiella Pneumoniae (Gmp Bound), PDB code: 9dua:

Magnesium binding site 1 out of 1 in the Crystal Structure of Adp-Ribose Diphosphatase From Klebsiella Pneumoniae (Gmp Bound)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Adp-Ribose Diphosphatase From Klebsiella Pneumoniae (Gmp Bound) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg303 b:48.9 occ:1.00 OE2 B:GLU116 2.2 33.4 1.0 O B:HOH471 2.2 34.6 1.0 OE1 B:GLU112 2.3 26.4 1.0 O B:HOH544 2.3 47.4 1.0 O B:HOH417 2.4 30.1 1.0 OE2 B:GLU164 2.7 56.9 1.0 CD B:GLU116 3.1 29.5 1.0 CD B:GLU112 3.3 23.9 1.0 CG B:GLU116 3.4 26.1 1.0 OE2 B:GLU112 3.6 24.8 1.0 O B:HOH433 3.7 34.8 1.0 CD B:GLU164 3.7 54.3 1.0 O B:HOH402 3.8 27.8 1.0 OE1 B:GLU164 4.0 54.6 1.0 O B:ALA96 4.0 17.6 1.0 OE1 B:GLU116 4.3 27.7 1.0 O3P B:5GP302 4.5 88.1 1.0 CG B:GLU112 4.6 20.8 1.0 OE1 B:GLU115 4.7 34.8 1.0 O B:HOH456 4.9 33.8 1.0 O B:HOH502 4.9 29.0 1.0 CB B:GLU112 4.9 19.9 1.0 CB B:GLU116 4.9 24.3 1.0

L.Liu, S.Lovell, G.W.Buchko, K.P.Battaile. Crystal Structure of Adp-Ribose Diphosphatase From Klebsiella Pneumoniae (Gmp Bound) To Be Published.