Magnesium in PDB 9duq: Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Magnesium atom in the Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule (pdb code 9duq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 18 binding sites of Magnesium where determined in the Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule, PDB code: 9duq:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 18 in the Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:81.6 occ:1.00 O2G B:G2P501 2.0 84.8 1.0 O2B B:G2P501 2.2 76.3 1.0 OE1 B:GLU71 2.7 99.2 1.0 PG B:G2P501 2.9 92.0 1.0 CD B:GLU71 3.1 96.6 1.0 OE2 B:GLU71 3.1 91.5 1.0 O1G B:G2P501 3.2 83.0 1.0 PB B:G2P501 3.3 64.8 1.0 O3B B:G2P501 3.4 58.6 1.0 OD1 B:ASP69 4.1 90.0 1.0 C3A B:G2P501 4.1 68.1 1.0 CG B:GLU71 4.2 87.1 1.0 O3G B:G2P501 4.3 91.5 1.0 OD2 B:ASP69 4.3 98.2 1.0 OG1 B:THR145 4.6 87.3 1.0 O1B B:G2P501 4.6 80.9 1.0 CB B:GLN11 4.6 75.7 1.0 N B:GLN11 4.6 66.6 1.0 CB B:THR145 4.6 71.4 1.0 CG B:ASP69 4.7 89.6 1.0 CB B:GLU71 4.8 79.3 1.0

Magnesium binding site 2 out of 18 in the Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:42.7 occ:1.00 O3G A:GTP501 1.9 65.2 1.0 OE2 A:GLU71 1.9 93.6 1.0 O1B A:GTP501 2.7 66.0 1.0 CD A:GLU71 2.9 97.6 1.0 OD2 A:ASP98 3.0 97.4 1.0 OE1 A:GLU71 3.3 95.7 1.0 PG A:GTP501 3.3 78.2 1.0 O3A A:GTP501 3.5 70.3 1.0 PB A:GTP501 3.5 71.8 1.0 CG A:ASP98 3.6 98.2 1.0 OD1 A:ASP98 3.6 101.2 1.0 NZ B:LYS254 3.7 70.7 1.0 O3B A:GTP501 3.9 73.5 1.0 O1G A:GTP501 4.0 83.5 1.0 CG A:GLU71 4.1 90.0 1.0 OE1 A:GLN11 4.2 77.7 1.0 CB A:GLN11 4.3 63.1 1.0 O2G A:GTP501 4.3 70.3 1.0 OD2 A:ASP69 4.5 93.1 1.0 OD1 A:ASP69 4.5 89.6 1.0 N A:GLN11 4.6 60.9 1.0 PA A:GTP501 4.8 74.8 1.0 OG1 A:THR145 4.9 72.9 1.0 O1A A:GTP501 4.9 86.3 1.0 CB A:ASP98 4.9 89.4 1.0 O2B A:GTP501 4.9 78.4 1.0 CE B:LYS254 5.0 69.2 1.0 CG A:ASP69 5.0 87.5 1.0

Magnesium binding site 3 out of 18 in the Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:88.7 occ:1.00 O2B D:G2P501 2.0 88.4 1.0 O2G D:G2P501 2.0 100.5 1.0 O1G D:G2P501 2.1 92.4 1.0 PG D:G2P501 2.4 107.3 1.0 PB D:G2P501 3.0 79.1 1.0 O3B D:G2P501 3.0 93.2 1.0 O3G D:G2P501 3.8 100.3 1.0 C3A D:G2P501 4.1 84.0 1.0 OG1 D:THR145 4.2 102.8 1.0 O1B D:G2P501 4.2 95.4 1.0 CB D:THR145 4.5 95.5 1.0 OD1 D:ASP69 4.8 105.2 1.0 CB D:GLN11 4.9 84.7 1.0 N D:GLN11 5.0 77.5 1.0

Magnesium binding site 4 out of 18 in the Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:52.8 occ:1.00 O3G C:GTP501 2.0 85.9 1.0 O1B C:GTP501 2.0 82.4 1.0 OE2 C:GLU71 2.1 98.4 1.0 CD C:GLU71 3.0 106.8 1.0 PG C:GTP501 3.1 90.5 1.0 PB C:GTP501 3.1 77.6 1.0 OE1 C:GLU71 3.4 107.0 1.0 O3B C:GTP501 3.5 82.2 1.0 O1G C:GTP501 3.5 90.3 1.0 O3A C:GTP501 3.6 88.0 1.0 NZ D:LYS254 3.9 91.4 1.0 CB C:GLN11 4.1 75.5 1.0 OE1 C:GLN11 4.3 87.7 1.0 CG C:GLU71 4.3 99.9 1.0 N C:GLN11 4.3 73.0 1.0 O2G C:GTP501 4.4 87.9 1.0 O2B C:GTP501 4.4 81.2 1.0 PA C:GTP501 4.7 87.8 1.0 O1A C:GTP501 4.7 86.8 1.0 OD2 C:ASP69 4.7 91.6 1.0 CB C:ASP98 4.8 95.5 1.0 CA C:GLN11 4.9 77.0 1.0 CG2 C:THR145 4.9 84.7 1.0 CE D:LYS254 4.9 84.2 1.0 OG1 C:THR145 4.9 82.3 1.0

Magnesium binding site 5 out of 18 in the Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg502 b:97.8 occ:1.00 O2B F:G2P501 2.0 81.2 1.0 O2G F:G2P501 2.0 101.0 1.0 O1G F:G2P501 2.2 100.7 1.0 PG F:G2P501 2.4 111.7 1.0 OE2 F:GLU71 3.0 105.9 1.0 PB F:G2P501 3.0 77.0 1.0 O3B F:G2P501 3.0 84.5 1.0 CD F:GLU71 3.7 106.8 1.0 OE1 F:GLU71 3.8 105.6 1.0 O3G F:G2P501 3.9 98.5 1.0 C3A F:G2P501 3.9 84.2 1.0 OG1 F:THR145 4.1 97.1 1.0 O1B F:G2P501 4.3 93.3 1.0 OD1 F:ASP69 4.5 108.6 1.0 CB F:THR145 4.6 84.1 1.0 O2A F:G2P501 4.7 97.3 1.0 N F:GLN11 4.7 93.5 1.0 CB F:GLN11 4.7 85.4 1.0 PA F:G2P501 4.9 93.5 1.0

Magnesium binding site 6 out of 18 in the Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:91.0 occ:1.00 OE2 E:GLU71 2.1 99.3 1.0 O3G E:GTP501 2.3 84.0 1.0 O1B E:GTP501 2.4 71.6 1.0 OD1 E:ASP98 2.4 111.6 1.0 CD E:GLU71 2.9 103.9 1.0 OE1 E:GLU71 3.3 104.1 1.0 CG E:ASP98 3.4 108.9 1.0 PB E:GTP501 3.6 62.5 1.0 PG E:GTP501 3.6 95.0 1.0 OD2 E:ASP98 3.7 105.6 1.0 O3B E:GTP501 3.9 80.9 1.0 CG E:GLU71 4.0 98.4 1.0 O3A E:GTP501 4.0 81.8 1.0 NZ F:LYS254 4.2 84.5 1.0 OE1 E:GLN11 4.3 81.6 1.0 CB E:GLN11 4.5 73.2 1.0 O1G E:GTP501 4.5 91.6 1.0 O2G E:GTP501 4.6 88.2 1.0 O F:ASN249 4.7 91.8 1.0 CB E:ASP98 4.8 102.1 1.0 OD1 E:ASP69 4.8 98.6 1.0 CD F:LYS254 4.8 79.8 1.0 O2B E:GTP501 4.8 82.9 1.0 N E:GLN11 4.9 69.1 1.0 CB F:ASN249 5.0 83.9 1.0 OG1 E:THR145 5.0 76.6 1.0

Magnesium binding site 7 out of 18 in the Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg502 b:113.8 occ:1.00 O2B H:G2P501 2.0 115.1 1.0 O2G H:G2P501 2.0 119.0 1.0 O1G H:G2P501 2.1 121.0 1.0 PG H:G2P501 2.4 126.2 1.0 PB H:G2P501 3.0 111.1 1.0 O3B H:G2P501 3.0 115.9 1.0 O3G H:G2P501 3.8 121.1 1.0 C3A H:G2P501 4.0 112.5 1.0 O1B H:G2P501 4.2 113.2 1.0 OG1 H:THR145 4.4 126.0 1.0 CB H:GLN11 4.4 109.1 1.0 CB H:THR145 4.5 121.6 1.0 OD1 H:ASP69 4.5 120.8 1.0 OD2 H:ASP69 4.7 119.0 1.0 N H:GLN11 4.7 106.6 1.0 CG H:GLU71 4.9 129.3 1.0 O2A H:G2P501 4.9 116.8 1.0 PA H:G2P501 5.0 113.4 1.0

Magnesium binding site 8 out of 18 in the Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg502 b:90.5 occ:1.00 O3G G:GTP501 2.0 108.7 1.0 OE2 G:GLU71 2.2 117.0 1.0 O1G G:GTP501 2.4 113.8 1.0 O1B G:GTP501 2.5 110.2 1.0 O3A G:GTP501 2.5 107.1 1.0 PG G:GTP501 2.5 117.6 1.0 PB G:GTP501 2.8 107.2 1.0 CD G:GLU71 2.9 122.8 1.0 OE1 G:GLU71 3.1 121.6 1.0 O3B G:GTP501 3.1 108.4 1.0 NZ H:LYS254 3.8 108.4 1.0 O2G G:GTP501 4.0 112.2 1.0 PA G:GTP501 4.1 110.0 1.0 CG G:GLU71 4.2 120.0 1.0 O2B G:GTP501 4.3 106.3 1.0 O1A G:GTP501 4.4 114.1 1.0 OD1 G:ASP69 4.5 111.4 1.0 CB G:GLN11 4.5 92.2 1.0 N G:GLN11 4.6 93.5 1.0 OE1 G:GLN11 4.6 102.0 1.0 CE H:LYS254 4.7 104.4 1.0 OG1 G:THR145 4.8 108.8 1.0 O2A G:GTP501 4.9 110.3 1.0 CB G:ASP98 4.9 111.1 1.0 OD2 G:ASP69 4.9 109.0 1.0 O5' G:GTP501 5.0 101.9 1.0

Magnesium binding site 9 out of 18 in the Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg502 b:110.5 occ:1.00 O2B J:G2P501 2.0 98.2 1.0 O2G J:G2P501 2.0 104.0 1.0 O1G J:G2P501 2.1 108.4 1.0 PG J:G2P501 2.3 114.7 1.0 O3B J:G2P501 2.9 93.7 1.0 PB J:G2P501 2.9 92.5 1.0 OE1 J:GLU71 2.9 112.7 1.0 CD J:GLU71 3.4 110.6 1.0 OE2 J:GLU71 3.4 105.6 1.0 O3G J:G2P501 3.8 103.8 1.0 OG1 J:THR145 3.8 108.1 1.0 C3A J:G2P501 3.9 90.5 1.0 O1B J:G2P501 4.2 98.2 1.0 CB J:THR145 4.3 96.0 1.0 CB J:GLN11 4.4 93.3 1.0 N J:GLN11 4.6 86.6 1.0 CG J:GLU71 4.7 106.3 1.0 OD1 J:ASP69 4.7 107.1 1.0 OD2 J:ASP69 4.8 104.0 1.0

Magnesium binding site 10 out of 18 in the Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Hurp(65-174) Bound to Gmpcpp-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg502 b:58.7 occ:1.00 O3G I:GTP501 2.0 86.3 1.0 OE2 I:GLU71 2.3 106.2 1.0 CD I:GLU71 2.7 109.7 1.0 O1B I:GTP501 2.8 81.9 1.0 OE1 I:GLU71 2.9 112.0 1.0 PG I:GTP501 3.2 96.3 1.0 O1G I:GTP501 3.5 96.1 1.0 O3A I:GTP501 3.5 82.5 1.0 PB I:GTP501 3.6 86.4 1.0 NZ J:LYS254 3.6 86.7 1.0 CG I:GLU71 3.8 103.7 1.0 O3B I:GTP501 3.8 86.4 1.0 OE1 I:GLN11 4.1 93.9 1.0 CB I:GLN11 4.3 82.0 1.0 O J:ASN249 4.3 91.9 1.0 O2G I:GTP501 4.4 86.1 1.0 OD1 I:ASP69 4.4 97.7 1.0 CB I:ASP98 4.4 100.4 1.0 OD2 I:ASP98 4.5 104.5 1.0 OD2 I:ASP69 4.5 100.3 1.0 CE J:LYS254 4.7 83.5 1.0 CB I:GLU71 4.7 97.6 1.0 N I:GLN11 4.7 78.3 1.0 PA I:GTP501 4.9 85.6 1.0 CG I:ASP69 4.9 99.1 1.0 CG I:ASP98 5.0 105.7 1.0 O2B I:GTP501 5.0 92.5 1.0

V.A.Valdez, M.Ma, B.Gouveia, R.Zhang, S.Petry. Hurp Facilitates Spindle Assembly By Stabilizing Microtubules and Working Synergistically with TPX2. Nat Commun V. 15 9689 2024.
ISSN: ESSN 2041-1723
PubMed: 39516491
DOI: 10.1038/S41467-024-53630-6