Magnesium in PDB 9dva: F-Actin Binding Interface of Alpha-E-Catenin Abd (Cadherin-Catenin Complex) and Afadin

The binding sites of Magnesium atom in the F-Actin Binding Interface of Alpha-E-Catenin Abd (Cadherin-Catenin Complex) and Afadin (pdb code 9dva). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the F-Actin Binding Interface of Alpha-E-Catenin Abd (Cadherin-Catenin Complex) and Afadin, PDB code: 9dva:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the F-Actin Binding Interface of Alpha-E-Catenin Abd (Cadherin-Catenin Complex) and Afadin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F-Actin Binding Interface of Alpha-E-Catenin Abd (Cadherin-Catenin Complex) and Afadin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:68.7 occ:1.00 O2B A:ADP401 2.2 80.9 1.0 O3A A:ADP401 2.6 80.9 1.0 PB A:ADP401 2.8 80.9 1.0 O1B A:ADP401 3.2 80.9 1.0 PA A:ADP401 4.0 80.9 1.0 O3B A:ADP401 4.2 80.9 1.0 CA A:GLY156 4.3 80.1 1.0 NE2 A:GLN137 4.3 81.0 1.0 O2A A:ADP401 4.5 80.9 1.0 O1A A:ADP401 4.6 80.9 1.0 OD2 A:ASP154 4.7 81.3 1.0 CA A:GLY13 4.8 82.0 1.0 OD1 A:ASP154 4.9 81.3 1.0 OD2 A:ASP11 4.9 83.3 1.0 NZ A:LYS18 4.9 78.3 1.0

Magnesium binding site 2 out of 5 in the F-Actin Binding Interface of Alpha-E-Catenin Abd (Cadherin-Catenin Complex) and Afadin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of F-Actin Binding Interface of Alpha-E-Catenin Abd (Cadherin-Catenin Complex) and Afadin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:56.1 occ:1.00 O2B B:ADP401 2.7 61.9 1.0 OE1 B:GLN137 3.6 65.4 1.0 PB B:ADP401 3.7 61.9 1.0 O3A B:ADP401 3.8 61.9 1.0 O3B B:ADP401 3.9 61.9 1.0 O2A B:ADP401 4.1 61.9 1.0 CD B:GLN137 4.4 65.4 1.0 NE2 B:GLN137 4.6 65.4 1.0 CA B:GLY156 4.6 64.7 1.0 PA B:ADP401 4.6 61.9 1.0 CG2 B:VAL339 4.7 60.1 1.0 OD2 B:ASP154 4.7 64.7 1.0 OD1 B:ASP154 4.8 64.7 1.0 OD2 B:ASP11 4.8 66.5 1.0 NZ B:LYS18 4.9 60.6 1.0

Magnesium binding site 3 out of 5 in the F-Actin Binding Interface of Alpha-E-Catenin Abd (Cadherin-Catenin Complex) and Afadin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of F-Actin Binding Interface of Alpha-E-Catenin Abd (Cadherin-Catenin Complex) and Afadin within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:55.4 occ:1.00 O3B C:ADP401 2.6 70.9 1.0 NE2 C:GLN137 2.9 66.0 1.0 O2A C:ADP401 3.6 70.9 1.0 PB C:ADP401 4.0 70.9 1.0 CD C:GLN137 4.2 66.0 1.0 OD1 C:ASP154 4.3 63.9 1.0 O1B C:ADP401 4.4 70.9 1.0 CG2 C:VAL339 4.6 60.3 1.0 O3A C:ADP401 4.7 70.9 1.0 PA C:ADP401 4.7 70.9 1.0 NZ C:LYS18 4.8 67.3 1.0 OD2 C:ASP11 4.8 74.2 1.0 OD2 C:ASP154 4.9 63.9 1.0 CA C:GLY156 4.9 67.0 1.0 OE1 C:GLN137 4.9 66.0 1.0

Magnesium binding site 4 out of 5 in the F-Actin Binding Interface of Alpha-E-Catenin Abd (Cadherin-Catenin Complex) and Afadin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of F-Actin Binding Interface of Alpha-E-Catenin Abd (Cadherin-Catenin Complex) and Afadin within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:62.8 occ:1.00 O3B D:ADP401 2.1 70.7 1.0 OE1 D:GLN137 3.4 75.8 1.0 PB D:ADP401 3.6 70.7 1.0 O2A D:ADP401 3.9 70.7 1.0 CD D:GLN137 4.1 75.8 1.0 O1B D:ADP401 4.2 70.7 1.0 NE2 D:GLN137 4.3 75.8 1.0 O2B D:ADP401 4.5 70.7 1.0 O3A D:ADP401 4.5 70.7 1.0 OD2 D:ASP154 4.6 70.7 1.0 OD1 D:ASP154 4.7 70.7 1.0 CG2 D:VAL339 4.7 70.4 1.0 PA D:ADP401 4.8 70.7 1.0 CA D:GLY156 4.9 71.1 1.0 NZ D:LYS18 5.0 74.8 1.0

Magnesium binding site 5 out of 5 in the F-Actin Binding Interface of Alpha-E-Catenin Abd (Cadherin-Catenin Complex) and Afadin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of F-Actin Binding Interface of Alpha-E-Catenin Abd (Cadherin-Catenin Complex) and Afadin within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:63.5 occ:1.00 O2B E:ADP401 2.1 68.8 1.0 PB E:ADP401 3.4 68.8 1.0 NE2 E:GLN137 3.7 71.7 1.0 OE1 E:GLN137 3.7 71.7 1.0 O3B E:ADP401 4.0 68.8 1.0 CD E:GLN137 4.0 71.7 1.0 O1B E:ADP401 4.2 68.8 1.0 OD2 E:ASP11 4.3 74.6 1.0 NZ E:LYS18 4.3 69.8 1.0 CA E:GLY13 4.4 69.2 1.0 O2A E:ADP401 4.5 68.8 1.0 OD1 E:ASP11 4.5 74.6 1.0 O3A E:ADP401 4.5 68.8 1.0 CG2 E:VAL339 4.8 63.4 1.0 CG E:ASP11 4.8 74.6 1.0 OD2 E:ASP154 4.9 69.7 1.0

R.Gong, M.J.Reynolds, X.Sun, G.M.Alushin. Afadin Mediates Cadherin-Catenin Complex Clustering on F-Actin Linked to Cooperative Binding and Filament Curvature. Biorxiv 2024.
ISSN: ISSN 2692-8205
PubMed: 39415991
DOI: 10.1101/2024.10.08.617332