Magnesium in PDB 9dw8: Dephosphorylated (E1371Q)Cftr in Complex with Pka-C
Enzymatic activity of Dephosphorylated (E1371Q)Cftr in Complex with Pka-C
All present enzymatic activity of Dephosphorylated (E1371Q)Cftr in Complex with Pka-C:
2.7.11.11;
5.6.1.6;
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Dephosphorylated (E1371Q)Cftr in Complex with Pka-C
(pdb code 9dw8). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the
Dephosphorylated (E1371Q)Cftr in Complex with Pka-C, PDB code: 9dw8:
Jump to Magnesium binding site number:
1;
2;
3;
4;
Magnesium binding site 1 out
of 4 in 9dw8
Go back to
Magnesium Binding Sites List in 9dw8
Magnesium binding site 1 out
of 4 in the Dephosphorylated (E1371Q)Cftr in Complex with Pka-C
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Dephosphorylated (E1371Q)Cftr in Complex with Pka-C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1503
b:52.0
occ:1.00
|
OE1
|
A:GLN493
|
2.1
|
50.1
|
1.0
|
CD
|
A:GLN493
|
2.6
|
50.1
|
1.0
|
NE2
|
A:GLN493
|
2.6
|
50.1
|
1.0
|
O13
|
A:B441501
|
2.7
|
55.3
|
1.0
|
O10
|
A:B441501
|
2.7
|
55.3
|
1.0
|
OG1
|
A:THR465
|
2.8
|
48.2
|
1.0
|
O9
|
A:B441501
|
3.0
|
55.3
|
1.0
|
P3
|
A:B441501
|
3.2
|
55.3
|
1.0
|
CG
|
A:GLN493
|
4.0
|
50.1
|
1.0
|
CB
|
A:THR465
|
4.1
|
48.2
|
1.0
|
OD2
|
A:ASP572
|
4.1
|
52.5
|
1.0
|
P2
|
A:B441501
|
4.1
|
55.3
|
1.0
|
O12
|
A:B441501
|
4.2
|
55.3
|
1.0
|
O7
|
A:B441501
|
4.4
|
55.3
|
1.0
|
CB
|
A:GLN493
|
4.6
|
50.1
|
1.0
|
CB
|
A:HIS1348
|
4.6
|
52.1
|
1.0
|
OD1
|
A:ASP572
|
4.7
|
52.5
|
1.0
|
CG
|
A:ASP572
|
4.8
|
52.5
|
1.0
|
N
|
A:THR465
|
4.9
|
48.2
|
1.0
|
OG
|
A:SER573
|
4.9
|
54.1
|
1.0
|
CG2
|
A:THR465
|
5.0
|
48.2
|
1.0
|
O11
|
A:B441501
|
5.0
|
55.3
|
1.0
|
|
Magnesium binding site 2 out
of 4 in 9dw8
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Magnesium Binding Sites List in 9dw8
Magnesium binding site 2 out
of 4 in the Dephosphorylated (E1371Q)Cftr in Complex with Pka-C
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Dephosphorylated (E1371Q)Cftr in Complex with Pka-C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1504
b:45.6
occ:1.00
|
OE1
|
A:GLN1291
|
2.4
|
49.1
|
1.0
|
O13
|
A:B441502
|
2.5
|
51.2
|
1.0
|
CD
|
A:GLN1291
|
2.9
|
49.1
|
1.0
|
O9
|
A:B441502
|
2.9
|
51.2
|
1.0
|
NE2
|
A:GLN1291
|
2.9
|
49.1
|
1.0
|
O10
|
A:B441502
|
3.0
|
51.2
|
1.0
|
P3
|
A:B441502
|
3.2
|
51.2
|
1.0
|
P2
|
A:B441502
|
3.8
|
51.2
|
1.0
|
O12
|
A:B441502
|
3.9
|
51.2
|
1.0
|
CB
|
A:SER1251
|
4.1
|
46.0
|
1.0
|
OD1
|
A:ASP1370
|
4.2
|
54.0
|
1.0
|
OD2
|
A:ASP1370
|
4.2
|
54.0
|
1.0
|
CG
|
A:GLN1291
|
4.2
|
49.1
|
1.0
|
O11
|
A:B441502
|
4.5
|
51.2
|
1.0
|
O7
|
A:B441502
|
4.5
|
51.2
|
1.0
|
CG
|
A:ASP1370
|
4.6
|
54.0
|
1.0
|
OG
|
A:SER1251
|
4.7
|
46.0
|
1.0
|
CB
|
A:GLN1291
|
4.7
|
49.1
|
1.0
|
CG
|
A:GLN1371
|
4.8
|
56.1
|
1.0
|
|
Magnesium binding site 3 out
of 4 in 9dw8
Go back to
Magnesium Binding Sites List in 9dw8
Magnesium binding site 3 out
of 4 in the Dephosphorylated (E1371Q)Cftr in Complex with Pka-C
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Dephosphorylated (E1371Q)Cftr in Complex with Pka-C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg401
b:109.3
occ:1.00
|
O3G
|
G:ANP403
|
1.9
|
100.1
|
1.0
|
O2B
|
G:ANP403
|
2.0
|
100.1
|
1.0
|
N3B
|
G:ANP403
|
2.4
|
100.1
|
1.0
|
PG
|
G:ANP403
|
2.5
|
100.1
|
1.0
|
PB
|
G:ANP403
|
2.6
|
100.1
|
1.0
|
CA
|
G:GLY53
|
2.7
|
121.4
|
1.0
|
C
|
G:GLY53
|
2.7
|
121.4
|
1.0
|
O
|
G:GLY53
|
2.9
|
121.4
|
1.0
|
O2G
|
G:ANP403
|
3.5
|
100.1
|
1.0
|
N
|
G:SER54
|
3.5
|
125.2
|
1.0
|
O
|
G:THR52
|
3.6
|
119.3
|
1.0
|
O1B
|
G:ANP403
|
3.7
|
100.1
|
1.0
|
CB
|
G:SER54
|
3.7
|
125.2
|
1.0
|
O1G
|
G:ANP403
|
3.7
|
100.1
|
1.0
|
O3A
|
G:ANP403
|
3.7
|
100.1
|
1.0
|
N
|
G:GLY53
|
3.9
|
121.4
|
1.0
|
C
|
G:THR52
|
4.2
|
119.3
|
1.0
|
CA
|
G:SER54
|
4.2
|
125.2
|
1.0
|
O1A
|
G:ANP403
|
4.6
|
100.1
|
1.0
|
C5'
|
G:ANP403
|
4.7
|
100.1
|
1.0
|
PA
|
G:ANP403
|
4.7
|
100.1
|
1.0
|
MG
|
G:MG402
|
4.8
|
84.5
|
1.0
|
|
Magnesium binding site 4 out
of 4 in 9dw8
Go back to
Magnesium Binding Sites List in 9dw8
Magnesium binding site 4 out
of 4 in the Dephosphorylated (E1371Q)Cftr in Complex with Pka-C
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Dephosphorylated (E1371Q)Cftr in Complex with Pka-C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg402
b:84.5
occ:1.00
|
OD1
|
G:ASP185
|
2.3
|
81.1
|
1.0
|
O1A
|
G:ANP403
|
2.4
|
100.1
|
1.0
|
N3B
|
G:ANP403
|
2.6
|
100.1
|
1.0
|
O1G
|
G:ANP403
|
2.8
|
100.1
|
1.0
|
PG
|
G:ANP403
|
3.1
|
100.1
|
1.0
|
OD1
|
G:ASN172
|
3.2
|
66.7
|
1.0
|
CG
|
G:ASP185
|
3.4
|
81.1
|
1.0
|
O
|
G:GLU171
|
3.7
|
66.1
|
1.0
|
PA
|
G:ANP403
|
3.8
|
100.1
|
1.0
|
O2G
|
G:ANP403
|
3.9
|
100.1
|
1.0
|
CB
|
G:ASP185
|
3.9
|
81.1
|
1.0
|
PB
|
G:ANP403
|
4.0
|
100.1
|
1.0
|
CG
|
G:ASN172
|
4.0
|
66.7
|
1.0
|
O3A
|
G:ANP403
|
4.4
|
100.1
|
1.0
|
O1B
|
G:ANP403
|
4.4
|
100.1
|
1.0
|
O3G
|
G:ANP403
|
4.4
|
100.1
|
1.0
|
O2A
|
G:ANP403
|
4.4
|
100.1
|
1.0
|
OD2
|
G:ASP185
|
4.5
|
81.1
|
1.0
|
ND2
|
G:ASN172
|
4.5
|
66.7
|
1.0
|
C
|
G:GLU171
|
4.5
|
66.1
|
1.0
|
CA
|
G:ASN172
|
4.7
|
66.7
|
1.0
|
O5'
|
G:ANP403
|
4.8
|
100.1
|
1.0
|
MG
|
G:MG401
|
4.8
|
109.3
|
1.0
|
C5'
|
G:ANP403
|
4.9
|
100.1
|
1.0
|
CB
|
G:ASN172
|
4.9
|
66.7
|
1.0
|
CE
|
G:LYS169
|
5.0
|
61.9
|
1.0
|
N
|
G:ASN172
|
5.0
|
66.7
|
1.0
|
|
Reference:
K.Fiedorczuk,
I.Iordanov,
C.Mihalyi,
A.Szollosi,
L.Csanady,
J.Chen.
The Structures of Protein Kinase A in Complex with Cftr: Mechanisms of Phosphorylation and Non-Catalytic Activation To Be Published.
Page generated: Wed Nov 27 19:09:06 2024
|