Magnesium in PDB 9ed3: Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride

The structure of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride also contains other interesting chemical elements:

Fluorine	(F)	18 atoms
Aluminium	(Al)	6 atoms

The binding sites of Magnesium atom in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride (pdb code 9ed3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride, PDB code: 9ed3:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg503 b:16.4 occ:1.00 O3B A:ADP501 2.1 38.7 1.0 PB A:ADP501 3.4 28.6 1.0 O2B A:ADP501 3.9 29.5 1.0 N A:ARG188 4.1 21.4 1.0 O1B A:ADP501 4.2 31.6 1.0 CA A:PHE187 4.4 20.8 1.0 CD2 B:HIS352 4.5 19.6 1.0 O3A A:ADP501 4.5 21.4 1.0 CB A:PHE187 4.5 18.4 1.0 O2A A:ADP501 4.7 43.3 1.0 C A:PHE187 4.8 21.6 1.0 OE1 A:GLU221 5.0 48.3 1.0

Magnesium binding site 2 out of 6 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg503 b:13.3 occ:1.00 O3B C:ADP501 2.4 40.4 1.0 CD2 D:HIS352 3.5 21.4 1.0 PB C:ADP501 3.6 21.0 1.0 O2B C:ADP501 3.9 29.6 1.0 F3 C:AF3502 4.1 33.1 1.0 NE2 D:HIS352 4.2 10.6 1.0 O3A C:ADP501 4.5 26.0 1.0 CA C:PHE187 4.5 21.7 1.0 NZ C:LYS191 4.5 32.4 1.0 AL C:AF3502 4.6 46.7 1.0 N C:ARG188 4.6 16.7 1.0 CG D:HIS352 4.6 27.1 1.0 CB C:PHE187 4.7 14.8 1.0 OE1 C:GLU221 4.7 41.9 1.0 O1B C:ADP501 4.8 30.7 1.0 F1 C:AF3502 4.8 54.9 1.0 F2 C:AF3502 4.8 37.3 1.0 CA D:HIS352 5.0 19.7 1.0

Magnesium binding site 3 out of 6 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg503 b:15.1 occ:1.00 O3B D:ADP501 1.9 40.4 1.0 PB D:ADP501 3.3 17.2 1.0 O2B D:ADP501 3.8 31.4 1.0 AL D:AF3502 4.0 46.5 1.0 CD2 E:HIS352 4.0 17.4 1.0 O3A D:ADP501 4.2 23.2 1.0 N D:ARG188 4.2 22.5 1.0 F2 D:AF3502 4.2 42.3 1.0 CA D:PHE187 4.2 16.8 1.0 NZ D:LYS191 4.3 13.6 1.0 O1B D:ADP501 4.3 22.7 1.0 F1 D:AF3502 4.3 31.4 1.0 CB D:PHE187 4.5 11.2 1.0 F3 D:AF3502 4.7 46.0 1.0 NE2 E:HIS352 4.8 14.1 1.0 C D:PHE187 4.8 17.5 1.0 O E:HIS352 4.9 32.2 1.0 OE1 D:GLU221 5.0 47.5 1.0

Magnesium binding site 4 out of 6 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg503 b:14.8 occ:1.00 O3B E:ADP501 2.2 44.3 1.0 PB E:ADP501 3.6 31.0 1.0 CD2 F:HIS352 3.8 10.7 1.0 O1B E:ADP501 4.2 24.2 1.0 CA E:PHE187 4.2 26.0 1.0 O2B E:ADP501 4.2 30.6 1.0 F2 E:AF3502 4.3 45.6 1.0 N E:ARG188 4.4 22.7 1.0 CB E:PHE187 4.5 26.9 1.0 NE2 F:HIS352 4.5 13.4 1.0 F1 E:AF3502 4.5 44.1 1.0 NZ E:LYS191 4.6 28.6 1.0 O3A E:ADP501 4.7 26.4 1.0 AL E:AF3502 4.7 58.2 1.0 C E:PHE187 4.9 30.0 1.0 CG F:HIS352 4.9 7.1 1.0

Magnesium binding site 5 out of 6 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg503 b:26.2 occ:1.00 O3B F:ADP501 2.8 46.5 1.0 O2B F:ADP501 3.5 44.7 1.0 PB F:ADP501 3.7 34.3 1.0 OE1 F:GLU221 4.2 51.4 1.0 CB F:PHE187 4.4 39.7 1.0 O3A F:ADP501 4.5 51.8 1.0 CA F:PHE187 4.5 41.9 1.0 N F:ARG188 4.7 36.1 1.0 F1 F:AF3502 4.8 34.5 1.0 NZ F:LYS191 4.8 30.5 1.0 O1B F:ADP501 5.0 44.9 1.0

Magnesium binding site 6 out of 6 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg503 b:16.2 occ:1.00 O2B B:ADP501 2.9 43.7 1.0 CD2 C:HIS352 3.5 26.2 1.0 O3B B:ADP501 3.8 29.4 1.0 PB B:ADP501 3.9 23.6 1.0 F2 B:AF3502 4.0 48.4 1.0 F3 B:AF3502 4.0 45.7 1.0 AL B:AF3502 4.1 53.4 1.0 NE2 C:HIS352 4.2 19.0 1.0 CA B:PHE187 4.4 21.3 1.0 OE1 B:GLU221 4.5 44.7 1.0 NZ B:LYS191 4.6 19.4 1.0 N B:ARG188 4.6 27.0 1.0 F1 B:AF3502 4.6 44.9 1.0 CB B:PHE187 4.7 21.1 1.0 CG C:HIS352 4.7 25.2 1.0 O3A B:ADP501 4.8 22.9 1.0

J.Liu, S.Gore, W.-D.Heyer. Yeast RAD51-Ssdna Filament To Be Published.