Magnesium in PDB 9em9: Structure of Syndlp Mgd with Gmppnp

The binding sites of Magnesium atom in the Structure of Syndlp Mgd with Gmppnp (pdb code 9em9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Syndlp Mgd with Gmppnp, PDB code: 9em9:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Syndlp Mgd with Gmppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Syndlp Mgd with Gmppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:35.8 occ:1.00 O2B A:GNP801 1.9 35.8 1.0 OG1 A:THR82 1.9 18.6 1.0 O1G A:GNP801 1.9 35.8 1.0 N3B A:GNP801 2.2 35.8 1.0 PG A:GNP801 2.3 35.8 1.0 PB A:GNP801 2.4 35.8 1.0 O3G A:GNP801 2.8 35.8 1.0 CB A:THR82 2.8 18.6 1.0 O2A A:GNP801 3.1 35.8 1.0 O3A A:GNP801 3.5 35.8 1.0 OG A:SER62 3.6 14.6 1.0 O1B A:GNP801 3.7 35.8 1.0 CG2 A:THR82 3.7 18.6 1.0 O2G A:GNP801 3.7 35.8 1.0 PA A:GNP801 3.8 35.8 1.0 N A:THR82 3.9 18.6 1.0 CA A:THR82 4.0 18.6 1.0 NZ A:LYS61 4.1 14.5 1.0 O1A A:GNP801 4.2 35.8 1.0 C A:ALA81 4.3 29.4 1.0 CB A:SER62 4.4 14.6 1.0 N A:ALA81 4.4 29.4 1.0 CE A:LYS61 4.7 14.5 1.0 CA A:ALA81 4.8 29.4 1.0 O A:ALA81 4.8 29.4 1.0 CB A:ALA81 4.9 29.4 1.0

Magnesium binding site 2 out of 2 in the Structure of Syndlp Mgd with Gmppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Syndlp Mgd with Gmppnp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:35.8 occ:1.00 O2B B:GNP801 1.9 35.8 1.0 OG1 B:THR82 1.9 18.6 1.0 O1G B:GNP801 1.9 35.8 1.0 N3B B:GNP801 2.2 35.8 1.0 PG B:GNP801 2.3 35.8 1.0 PB B:GNP801 2.4 35.8 1.0 O3G B:GNP801 2.8 35.8 1.0 CB B:THR82 2.8 18.6 1.0 O2A B:GNP801 3.1 35.8 1.0 O3A B:GNP801 3.5 35.8 1.0 OG B:SER62 3.6 14.6 1.0 O1B B:GNP801 3.7 35.8 1.0 CG2 B:THR82 3.7 18.6 1.0 O2G B:GNP801 3.8 35.8 1.0 PA B:GNP801 3.8 35.8 1.0 N B:THR82 3.9 18.6 1.0 CA B:THR82 4.0 18.6 1.0 NZ B:LYS61 4.1 14.5 1.0 O1A B:GNP801 4.2 35.8 1.0 C B:ALA81 4.3 29.4 1.0 CB B:SER62 4.4 14.6 1.0 N B:ALA81 4.4 29.4 1.0 CE B:LYS61 4.7 14.5 1.0 CA B:ALA81 4.8 29.4 1.0 O B:ALA81 4.8 29.4 1.0 CB B:ALA81 4.9 29.4 1.0

B.Junglas, L.Gewehr, L.Mernberger, P.Schonnenbeck, R.Jilly, N.Hellmann, D.Schneider, C.Sachse. Structural Basis For Gtpase Activity and Conformational Changes of the Bacterial Dynamin-Like Protein Syndlp. Cell Rep V. 43 14657 2024.
ISSN: ESSN 2211-1247
PubMed: 39207903
DOI: 10.1016/J.CELREP.2024.114657