Magnesium in PDB 9erd: Human SLFN11 S753D Monomer

The structure of Human SLFN11 S753D Monomer also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Human SLFN11 S753D Monomer (pdb code 9erd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Human SLFN11 S753D Monomer, PDB code: 9erd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Human SLFN11 S753D Monomer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human SLFN11 S753D Monomer within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:46.7 occ:1.00 O2B A:ATP1002 1.8 51.8 1.0 O1G A:ATP1002 1.8 51.8 1.0 O3B A:ATP1002 2.0 51.8 1.0 PG A:ATP1002 2.2 51.8 1.0 OG1 A:THR606 2.3 51.7 1.0 PB A:ATP1002 2.4 51.8 1.0 O3G A:ATP1002 2.7 51.8 1.0 OE1 A:GLU669 3.3 54.5 1.0 O2A A:ATP1002 3.3 51.8 1.0 O3A A:ATP1002 3.4 51.8 1.0 O1B A:ATP1002 3.5 51.8 1.0 O2G A:ATP1002 3.6 51.8 1.0 CB A:THR606 3.7 51.7 1.0 PA A:ATP1002 3.9 51.8 1.0 N A:THR606 4.0 51.7 1.0 NZ A:LYS605 4.0 48.2 1.0 CA A:THR606 4.4 51.7 1.0 CD A:GLU669 4.4 54.5 1.0 O1A A:ATP1002 4.5 51.8 1.0 CG2 A:THR606 4.6 51.7 1.0 OD2 A:ASP668 4.6 47.4 1.0 OD1 A:ASP668 4.7 47.4 1.0 CB A:LYS605 4.8 48.2 1.0 OE2 A:GLU669 4.8 54.5 1.0

Magnesium binding site 2 out of 2 in the Human SLFN11 S753D Monomer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human SLFN11 S753D Monomer within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1003 b:115.5 occ:1.00 OE1 A:GLU209 2.2 133.3 1.0 OE1 A:GLU214 3.0 128.0 1.0 CD A:GLU209 3.2 133.3 1.0 O A:PHE215 3.5 136.5 1.0 CD A:GLU214 3.6 128.0 1.0 OE2 A:GLU209 3.7 133.3 1.0 OE2 A:GLU214 3.7 128.0 1.0 OD2 A:ASP252 3.8 140.4 1.0 CB A:ASP252 3.9 140.4 1.0 CG A:ASP252 4.2 140.4 1.0 N A:PHE215 4.3 136.5 1.0 CB A:GLU209 4.3 133.3 1.0 O A:ASP252 4.3 140.4 1.0 CG A:GLU209 4.3 133.3 1.0 CA A:ASP252 4.5 140.4 1.0 C A:PHE215 4.6 136.5 1.0 CB A:GLU214 4.8 128.0 1.0 CG A:GLU214 4.8 128.0 1.0 OH A:TYR234 4.8 113.9 1.0 C A:ASP252 4.8 140.4 1.0 CD A:LYS216 4.8 133.3 1.0 CA A:GLU214 4.9 128.0 1.0 CA A:PHE215 5.0 136.5 1.0 NZ A:LYS216 5.0 133.3 1.0

M.Kugler, F.J.Metzner, K.P.Hopfner, K.Lammens. Phosphorylation-Mediated Conformational Change Regulates Human SLFN11 Nat Commun 2024.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-024-54833-7