Magnesium in PDB 9g9e: Cryoem Structure of Enterococcus Italicus Csm-Crrna Complex Bound to Ampnpp

The binding sites of Magnesium atom in the Cryoem Structure of Enterococcus Italicus Csm-Crrna Complex Bound to Ampnpp (pdb code 9g9e). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryoem Structure of Enterococcus Italicus Csm-Crrna Complex Bound to Ampnpp, PDB code: 9g9e:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryoem Structure of Enterococcus Italicus Csm-Crrna Complex Bound to Ampnpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of Enterococcus Italicus Csm-Crrna Complex Bound to Ampnpp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:13.7 occ:1.00 OD2 A:ASP530 2.1 21.1 1.0 OD1 A:ASP584 2.3 16.7 1.0 O1A A:ZAN801 2.7 19.3 1.0 CG A:ASP530 2.9 15.4 1.0 OD1 A:ASP530 3.2 14.2 1.0 CG A:ASP584 3.2 13.7 1.0 OD2 A:ASP584 3.5 14.0 1.0 OD2 A:ASP585 3.6 19.6 1.0 CB A:ASP585 3.6 13.7 1.0 PA A:ZAN801 3.9 17.5 1.0 MG A:MG804 4.0 13.3 1.0 N A:ASP585 4.0 11.7 1.0 CG A:ASP585 4.1 18.7 1.0 O2A A:ZAN801 4.2 16.2 1.0 CA A:ASP585 4.2 11.6 1.0 CB A:ASP530 4.2 11.1 1.0 C A:ASP584 4.3 9.8 1.0 O2' A:ZAN802 4.5 17.0 1.0 CB A:ASP584 4.5 9.6 1.0 C5' A:ZAN801 4.6 16.8 1.0 O A:ASP584 4.6 14.8 1.0 O5' A:ZAN801 4.7 18.7 1.0 CA A:ASP584 4.8 8.0 1.0 O3' A:ZAN802 4.8 18.4 1.0 N A:ASP584 4.9 10.0 1.0 CA A:ASP530 4.9 8.3 1.0 NZ G:LYS91 5.0 20.6 1.0

Magnesium binding site 2 out of 2 in the Cryoem Structure of Enterococcus Italicus Csm-Crrna Complex Bound to Ampnpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of Enterococcus Italicus Csm-Crrna Complex Bound to Ampnpp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:13.3 occ:1.00 O A:ILE531 2.0 17.5 1.0 O1B A:ZAN801 2.0 15.0 1.0 OD1 A:ASP530 2.1 14.2 1.0 OD2 A:ASP584 2.2 14.0 1.0 O3G A:ZAN801 2.4 11.8 1.0 O1A A:ZAN801 2.5 19.3 1.0 PB A:ZAN801 3.0 20.0 1.0 C A:ILE531 3.2 13.3 1.0 N3A A:ZAN801 3.3 16.5 1.0 CG A:ASP530 3.3 15.4 1.0 CG A:ASP584 3.3 13.7 1.0 PA A:ZAN801 3.4 17.5 1.0 PG A:ZAN801 3.5 12.3 1.0 O3B A:ZAN801 3.6 17.2 1.0 N A:ILE531 3.9 9.5 1.0 OD2 A:ASP530 3.9 21.1 1.0 OD1 A:ASP584 3.9 16.7 1.0 CA A:ILE531 4.0 9.8 1.0 MG A:MG803 4.0 13.7 1.0 C5' A:ZAN801 4.2 16.8 1.0 N A:ASP532 4.2 10.0 1.0 O5' A:ZAN801 4.3 18.7 1.0 O2B A:ZAN801 4.3 16.1 1.0 O2G A:ZAN801 4.3 18.6 1.0 C A:ASP530 4.4 9.2 1.0 CB A:ILE531 4.4 9.5 1.0 CA A:ASP532 4.4 9.9 1.0 CB A:ASP584 4.4 9.6 1.0 CB A:ASP530 4.5 11.1 1.0 O2A A:ZAN801 4.6 16.2 1.0 N A:ASN533 4.6 11.9 1.0 CB A:LEU534 4.7 12.3 1.0 O1G A:ZAN801 4.7 15.2 1.0 N A:LEU534 4.7 11.7 1.0 C A:ASP532 4.8 11.7 1.0 CE A:LYS644 4.8 13.8 1.0 CA A:ASP530 4.9 8.3 1.0 O A:ASP530 4.9 13.0 1.0 NZ G:LYS91 4.9 20.6 1.0 NZ A:LYS644 4.9 14.2 1.0

K.Jungfer, S.Moravcik, C.Garcia-Doval, A.Knorlein, J.Hall, M.Jinek. Mechanistic Determinants and Dynamics of CA6 Synthesis in Type III Crispr-Cas Effector Complexes. Nucleic Acids Res. V. 53 2025.
ISSN: ESSN 1362-4962
PubMed: 39817514
DOI: 10.1093/NAR/GKAE1277