Magnesium in PDB 9g9f: Cryoem Structure of Enterococcus Italicus Csm-Crrna-Ctr Complex Bound to Ampnpp

The binding sites of Magnesium atom in the Cryoem Structure of Enterococcus Italicus Csm-Crrna-Ctr Complex Bound to Ampnpp (pdb code 9g9f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryoem Structure of Enterococcus Italicus Csm-Crrna-Ctr Complex Bound to Ampnpp, PDB code: 9g9f:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryoem Structure of Enterococcus Italicus Csm-Crrna-Ctr Complex Bound to Ampnpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of Enterococcus Italicus Csm-Crrna-Ctr Complex Bound to Ampnpp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:69.5 occ:1.00 O1A A:ZAN801 2.4 69.0 1.0 O2A A:ZAN801 2.5 69.7 1.0 OD1 A:ASP584 2.6 76.9 1.0 OD2 A:ASP584 2.6 72.7 1.0 O2' A:ZAN802 2.8 82.5 1.0 PA A:ZAN801 2.9 78.5 1.0 CG A:ASP584 3.0 73.0 1.0 MG A:MG804 3.7 52.9 1.0 O5' A:ZAN801 3.7 79.8 1.0 C5' A:ZAN801 3.8 78.3 1.0 C2' A:ZAN802 4.2 79.7 1.0 CB A:ASP530 4.2 61.3 1.0 OD1 A:ASP530 4.2 65.4 1.0 CG A:ASP530 4.4 70.9 1.0 N3A A:ZAN801 4.4 74.7 1.0 O3' A:ZAN802 4.5 82.2 1.0 CB A:ASP584 4.5 66.9 1.0 N A:ASP585 4.6 59.1 1.0 CB A:ASP585 4.7 64.3 1.0 C3' A:ZAN802 4.8 77.7 1.0

Magnesium binding site 2 out of 2 in the Cryoem Structure of Enterococcus Italicus Csm-Crrna-Ctr Complex Bound to Ampnpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of Enterococcus Italicus Csm-Crrna-Ctr Complex Bound to Ampnpp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:52.9 occ:1.00 O A:ILE531 1.9 67.9 1.0 OD1 A:ASP530 2.0 65.4 1.0 N A:ILE531 2.0 60.6 1.0 C A:ILE531 2.5 66.6 1.0 OD2 A:ASP584 2.6 72.7 1.0 O1A A:ZAN801 2.6 69.0 1.0 CA A:ILE531 2.6 61.5 1.0 CG A:ASP530 2.9 70.9 1.0 C A:ASP530 3.0 53.9 1.0 CB A:ASP530 3.1 61.3 1.0 CB A:ILE531 3.3 57.5 1.0 CA A:ASP530 3.5 47.0 1.0 MG A:MG803 3.7 69.5 1.0 CG A:ASP584 3.7 73.0 1.0 O3G A:ZAN801 3.8 62.6 1.0 N A:ASP532 3.9 62.9 1.0 O1B A:ZAN801 3.9 78.4 1.0 O A:ASP530 3.9 56.5 1.0 OD2 A:ASP530 4.1 74.3 1.0 PA A:ZAN801 4.1 78.5 1.0 CG2 A:ILE531 4.1 59.8 1.0 OD1 A:ASP584 4.5 76.9 1.0 CG1 A:ILE531 4.6 54.1 1.0 CB A:ASP584 4.6 66.9 1.0 CA A:ASP532 4.7 63.9 1.0 C5' A:ZAN801 4.7 78.3 1.0 N3A A:ZAN801 4.8 74.7 1.0 N A:ASP530 4.8 41.5 1.0 O2A A:ZAN801 4.9 69.7 1.0 PB A:ZAN801 4.9 74.6 1.0 O5' A:ZAN801 5.0 79.8 1.0

K.Jungfer, S.Moravcik, C.Garcia-Doval, A.Knorlein, J.Hall, M.Jinek. Mechanistic Determinants and Dynamics of CA6 Synthesis in Type III Crispr-Cas Effector Complexes. Nucleic Acids Res. V. 53 2025.
ISSN: ESSN 1362-4962
PubMed: 39817514
DOI: 10.1093/NAR/GKAE1277