Magnesium in PDB 9g9k: Cryoem Structure of Enterococcus Italicus Csm-Crrna-CTR2 Complex (4.3) Bound to Ampnpp

The binding sites of Magnesium atom in the Cryoem Structure of Enterococcus Italicus Csm-Crrna-CTR2 Complex (4.3) Bound to Ampnpp (pdb code 9g9k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryoem Structure of Enterococcus Italicus Csm-Crrna-CTR2 Complex (4.3) Bound to Ampnpp, PDB code: 9g9k:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryoem Structure of Enterococcus Italicus Csm-Crrna-CTR2 Complex (4.3) Bound to Ampnpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of Enterococcus Italicus Csm-Crrna-CTR2 Complex (4.3) Bound to Ampnpp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:45.9 occ:1.00 O1A A:ZAN801 1.9 44.2 1.0 OD2 A:ASP530 2.0 54.7 1.0 O A:ASP584 2.9 40.1 1.0 CG A:ASP530 3.0 45.9 1.0 PA A:ZAN801 3.3 51.8 1.0 OD1 A:ASP530 3.4 38.0 1.0 O2A A:ZAN801 3.8 47.4 1.0 N3A A:ZAN801 3.9 43.9 1.0 C A:ASP584 4.1 33.1 1.0 CG A:ASP584 4.3 41.3 1.0 CB A:ASP530 4.3 32.2 1.0 OD1 A:ASP584 4.4 41.6 1.0 O5' A:ZAN801 4.5 48.5 1.0 O3' A:ZAN802 4.5 50.1 1.0 OD2 A:ASP584 4.5 45.5 1.0 CB A:ASP584 4.6 34.9 1.0 CB A:ASP585 4.7 37.1 1.0 O2' A:ZAN802 4.7 47.0 1.0 MG A:MG804 4.7 37.2 1.0 C5' A:ZAN801 4.7 48.6 1.0 NZ G:LYS91 4.8 47.9 1.0 CA A:ASP585 5.0 28.6 1.0 CA A:ASP584 5.0 29.2 1.0

Magnesium binding site 2 out of 2 in the Cryoem Structure of Enterococcus Italicus Csm-Crrna-CTR2 Complex (4.3) Bound to Ampnpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of Enterococcus Italicus Csm-Crrna-CTR2 Complex (4.3) Bound to Ampnpp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:37.2 occ:1.00 O3G A:ZAN801 1.9 32.6 1.0 N3A A:ZAN801 1.9 43.9 1.0 O1B A:ZAN801 2.1 46.3 1.0 PB A:ZAN801 2.2 52.1 1.0 O A:ILE531 2.3 39.8 1.0 OD2 A:ASP584 2.6 45.5 1.0 OD1 A:ASP530 2.8 38.0 1.0 O3B A:ZAN801 2.9 41.8 1.0 PG A:ZAN801 2.9 28.8 1.0 PA A:ZAN801 3.4 51.8 1.0 C A:ILE531 3.5 33.3 1.0 CG A:ASP584 3.6 41.3 1.0 O2B A:ZAN801 3.6 39.4 1.0 O1A A:ZAN801 3.8 44.2 1.0 OD1 A:ASP584 3.9 41.6 1.0 O1G A:ZAN801 3.9 37.7 1.0 N A:ASN533 4.0 34.5 1.0 CG A:ASP530 4.0 45.9 1.0 O2G A:ZAN801 4.0 37.4 1.0 N A:LEU534 4.1 30.4 1.0 CA A:ASP532 4.1 29.0 1.0 C5' A:ZAN801 4.1 48.6 1.0 O5' A:ZAN801 4.2 48.5 1.0 N A:ASP532 4.2 27.9 1.0 C A:ASP532 4.3 32.8 1.0 CB A:LEU534 4.4 25.3 1.0 O2A A:ZAN801 4.5 47.4 1.0 OD2 A:ASP530 4.5 54.7 1.0 CA A:ILE531 4.6 28.6 1.0 N A:ILE531 4.7 28.3 1.0 MG A:MG803 4.7 45.9 1.0 CA A:ASN533 4.9 34.4 1.0 CA A:LEU534 4.9 31.5 1.0 CB A:ASP584 4.9 34.9 1.0 CE A:LYS644 4.9 38.9 1.0

K.Jungfer, S.Moravcik, C.Garcia-Doval, A.Knorlein, J.Hall, M.Jinek. Mechanistic Determinants and Dynamics of CA6 Synthesis in Type III Crispr-Cas Effector Complexes. Nucleic Acids Res. V. 53 2025.
ISSN: ESSN 1362-4962
PubMed: 39817514
DOI: 10.1093/NAR/GKAE1277