Magnesium in PDB 9gcu: Rho-P167L-Atp Gamma S

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Rho-P167L-Atp Gamma S (pdb code 9gcu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Rho-P167L-Atp Gamma S, PDB code: 9gcu:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 9gcu

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Magnesium binding site 1 out of 5 in the Rho-P167L-Atp Gamma S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rho-P167L-Atp Gamma S within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:108.5
occ:1.00
 O B:HOH605 2.1 95.6 1.0
OG1 B:THR185 2.1 105.8 1.0
O2B B:ADP502 2.1 126.5 1.0
O1B B:ADP502 2.9 122.1 1.0
PB B:ADP502 3.0 121.3 1.0
O2A B:ADP502 3.4 122.3 1.0
CB B:THR185 3.4 102.6 1.0
NH2 A:ARG366 3.7 97.3 0.5
O3A B:ADP502 3.9 124.3 1.0
NH2 B:ARG212 4.0 111.9 1.0
PA B:ADP502 4.0 119.9 1.0
N B:THR185 4.1 99.5 1.0
O3B B:ADP502 4.2 126.5 1.0
NE A:ARG366 4.3 97.1 0.5
CG2 B:THR185 4.3 102.2 1.0
O1A B:ADP502 4.3 124.8 1.0
CA B:THR185 4.3 99.7 1.0
OE1 B:GLU215 4.4 120.9 1.0
OE2 B:GLU211 4.4 114.4 1.0
CZ A:ARG366 4.4 96.7 0.5
O B:HOH601 4.7 123.8 1.0
CD B:GLU215 4.9 121.1 1.0

Magnesium binding site 2 out of 5 in 9gcu

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Magnesium binding site 2 out of 5 in the Rho-P167L-Atp Gamma S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Rho-P167L-Atp Gamma S within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg501

b:69.8
occ:1.00
 O C:HOH617 2.0 74.5 1.0
O C:HOH612 2.0 101.1 1.0
OG1 C:THR185 2.1 87.6 1.0
O1B C:ADP502 2.1 85.8 1.0
PB C:ADP502 3.2 90.3 1.0
CB C:THR185 3.4 86.4 1.0
O2B C:ADP502 3.4 83.5 1.0
OE1 C:GLU215 3.7 106.2 1.0
O2A C:ADP502 3.9 89.4 1.0
NH2 C:ARG212 4.0 83.7 1.0
N C:THR185 4.1 85.8 1.0
OE2 C:GLU215 4.2 105.1 1.0
CA C:THR185 4.3 84.3 1.0
CD C:GLU215 4.3 104.8 1.0
O3B C:ADP502 4.3 88.8 1.0
NH1 B:ARG366 4.3 81.2 1.0
CG2 C:THR185 4.3 85.6 1.0
O3A C:ADP502 4.3 83.8 1.0
PA C:ADP502 4.5 79.2 1.0
OD2 C:ASP265 4.6 109.2 1.0
NH2 B:ARG366 4.6 84.4 1.0
O1A C:ADP502 4.8 78.7 1.0
OE2 C:GLU211 4.8 105.7 1.0
CZ B:ARG366 4.8 82.7 1.0
CE C:LYS184 4.9 88.3 1.0
CB C:LYS184 4.9 84.4 1.0

Magnesium binding site 3 out of 5 in 9gcu

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Magnesium binding site 3 out of 5 in the Rho-P167L-Atp Gamma S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Rho-P167L-Atp Gamma S within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg501

b:82.9
occ:1.00
 O D:HOH602 2.0 105.5 1.0
O D:HOH601 2.0 95.2 1.0
O D:HOH623 2.0 88.7 1.0
O1B D:ADP502 2.1 83.1 1.0
O D:HOH628 2.1 103.6 1.0
OG1 D:THR185 2.1 81.0 1.0
PB D:ADP502 3.1 83.1 1.0
O3B D:ADP502 3.3 85.0 1.0
CB D:THR185 3.4 73.9 1.0
O2B D:ADP502 4.0 85.1 1.0
O2A D:ADP502 4.1 86.3 1.0
OE2 D:GLU211 4.1 101.2 1.0
NH2 D:ARG212 4.2 83.2 1.0
CG2 D:THR185 4.2 71.2 1.0
O C:HOH622 4.3 96.6 1.0
O3A D:ADP502 4.3 82.7 1.0
OD2 D:ASP265 4.4 97.9 1.0
CG D:LYS184 4.4 76.7 1.0
N D:THR185 4.4 68.4 1.0
CA D:THR185 4.4 67.6 1.0
NH1 C:ARG366 4.6 78.8 1.0
OE2 D:GLU215 4.6 92.6 1.0
PA D:ADP502 4.7 83.3 1.0
OE1 D:GLU211 4.7 96.8 1.0
CD D:GLU211 4.8 98.1 1.0
CD D:LYS184 4.9 79.7 1.0

Magnesium binding site 4 out of 5 in 9gcu

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Magnesium binding site 4 out of 5 in the Rho-P167L-Atp Gamma S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Rho-P167L-Atp Gamma S within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg501

b:96.4
occ:1.00
 O E:HOH602 2.1 89.1 1.0
O E:HOH604 2.1 106.2 1.0
OG1 E:THR185 2.1 87.7 1.0
O3B E:ADP502 2.1 85.3 1.0
OE2 E:GLU215 2.5 95.8 1.0
CB E:THR185 3.3 82.1 1.0
NH2 E:ARG212 3.4 85.8 1.0
PB E:ADP502 3.5 80.9 1.0
O2A E:ADP502 3.7 89.2 1.0
CD E:GLU215 3.8 95.0 1.0
CG2 E:THR185 4.0 83.4 1.0
O2B E:ADP502 4.0 88.7 1.0
O3A E:ADP502 4.3 87.7 1.0
CZ E:ARG212 4.4 82.6 1.0
PA E:ADP502 4.4 85.8 1.0
CA E:THR185 4.4 69.7 1.0
N E:THR185 4.5 77.1 1.0
O1B E:ADP502 4.5 83.0 1.0
CG E:GLU215 4.5 89.6 1.0
OE2 E:GLU211 4.6 100.5 1.0
OE1 E:GLU215 4.7 97.3 1.0
O1A E:ADP502 4.7 86.5 1.0
NH1 E:ARG212 4.8 79.2 1.0
OD2 E:ASP265 4.9 105.5 1.0

Magnesium binding site 5 out of 5 in 9gcu

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Magnesium binding site 5 out of 5 in the Rho-P167L-Atp Gamma S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Rho-P167L-Atp Gamma S within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg501

b:99.7
occ:1.00
 OG1 F:THR185 2.1 105.1 1.0
O1B F:ADP502 2.1 140.8 1.0
CB F:THR185 3.4 105.2 1.0
PB F:ADP502 3.4 141.7 1.0
O2B F:ADP502 3.7 142.5 1.0
O1A F:ADP502 3.9 140.8 1.0
NH2 F:ARG212 3.9 86.9 1.0
N F:THR185 4.1 97.0 1.0
OE2 F:GLU211 4.2 89.7 1.0
CA F:THR185 4.3 98.0 1.0
CG2 F:THR185 4.3 104.3 1.0
OE2 F:GLU215 4.3 102.1 1.0
O3A F:ADP502 4.4 140.9 1.0
O3B F:ADP502 4.4 139.9 1.0
PA F:ADP502 4.5 149.5 1.0
NZ F:LYS184 4.7 119.5 1.0
O2A F:ADP502 4.8 146.7 1.0
CD F:GLU215 4.9 100.7 1.0
CE F:LYS184 4.9 119.4 1.0

Reference:

D.Gjorgjevikj, M.C.Wahl, T.Hilal, B.Loll. Rho-P167L-Atp Gamma S To Be Published.
Page generated: Thu Oct 31 22:33:34 2024

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