Magnesium in PDB 9go5: Cryoem Reconstruction of Yeast Adp-Actin Filament at 2.5 A Resolution.

The binding sites of Magnesium atom in the Cryoem Reconstruction of Yeast Adp-Actin Filament at 2.5 A Resolution. (pdb code 9go5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryoem Reconstruction of Yeast Adp-Actin Filament at 2.5 A Resolution., PDB code: 9go5:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryoem Reconstruction of Yeast Adp-Actin Filament at 2.5 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Reconstruction of Yeast Adp-Actin Filament at 2.5 A Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:17.8 occ:1.00 O2B A:ADP401 2.0 25.1 1.0 O A:HOH501 2.0 28.4 1.0 O A:HOH504 2.1 13.9 1.0 O A:HOH510 2.1 22.8 1.0 O A:HOH503 2.1 14.7 1.0 O A:HOH519 2.8 25.3 1.0 PB A:ADP401 3.3 10.6 1.0 O3B A:ADP401 3.8 11.7 1.0 OD2 A:ASP154 4.1 20.4 1.0 O A:HOH509 4.1 24.3 1.0 CD A:GLN137 4.1 20.3 1.0 OE1 A:GLN137 4.1 24.3 1.0 OD1 A:ASP11 4.1 22.6 1.0 NE2 A:GLN137 4.2 18.6 1.0 OD2 A:ASP11 4.2 23.6 1.0 O1B A:ADP401 4.3 13.0 1.0 O2A A:ADP401 4.3 13.0 1.0 CA A:GLY13 4.3 17.0 1.0 O3A A:ADP401 4.4 14.5 1.0 CG A:ASP11 4.6 19.8 1.0 NZ A:LYS18 4.6 12.6 1.0 CG A:GLN137 4.7 13.6 1.0 CA A:GLY156 4.8 10.5 1.0 PA A:ADP401 4.9 12.7 1.0 OD1 A:ASP154 4.9 20.3 1.0 CG A:ASP154 4.9 19.6 1.0

Magnesium binding site 2 out of 5 in the Cryoem Reconstruction of Yeast Adp-Actin Filament at 2.5 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Reconstruction of Yeast Adp-Actin Filament at 2.5 A Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:17.8 occ:1.00 O2B B:ADP401 2.0 25.1 1.0 O B:HOH501 2.0 28.4 1.0 O B:HOH504 2.1 13.9 1.0 O B:HOH510 2.1 22.8 1.0 O B:HOH503 2.1 14.7 1.0 O B:HOH519 2.8 25.3 1.0 PB B:ADP401 3.3 10.6 1.0 O3B B:ADP401 3.8 11.7 1.0 OD2 B:ASP154 4.1 20.4 1.0 O B:HOH509 4.1 24.3 1.0 CD B:GLN137 4.1 20.3 1.0 OE1 B:GLN137 4.1 24.3 1.0 OD1 B:ASP11 4.1 22.6 1.0 NE2 B:GLN137 4.2 18.6 1.0 OD2 B:ASP11 4.2 23.6 1.0 O1B B:ADP401 4.3 13.0 1.0 O2A B:ADP401 4.3 13.0 1.0 CA B:GLY13 4.3 17.0 1.0 O3A B:ADP401 4.4 14.5 1.0 CG B:ASP11 4.6 19.8 1.0 NZ B:LYS18 4.6 12.6 1.0 CG B:GLN137 4.7 13.6 1.0 CA B:GLY156 4.8 10.5 1.0 PA B:ADP401 4.9 12.7 1.0 OD1 B:ASP154 4.9 20.3 1.0 CG B:ASP154 4.9 19.6 1.0

Magnesium binding site 3 out of 5 in the Cryoem Reconstruction of Yeast Adp-Actin Filament at 2.5 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Reconstruction of Yeast Adp-Actin Filament at 2.5 A Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:17.8 occ:1.00 O2B C:ADP401 2.0 25.1 1.0 O C:HOH501 2.0 28.4 1.0 O C:HOH504 2.1 13.9 1.0 O C:HOH510 2.1 22.8 1.0 O C:HOH503 2.1 14.7 1.0 O C:HOH518 2.8 25.3 1.0 PB C:ADP401 3.3 10.6 1.0 O3B C:ADP401 3.8 11.7 1.0 OD2 C:ASP154 4.1 20.4 1.0 O C:HOH509 4.1 24.3 1.0 CD C:GLN137 4.1 20.3 1.0 OE1 C:GLN137 4.1 24.3 1.0 OD1 C:ASP11 4.1 22.6 1.0 NE2 C:GLN137 4.2 18.6 1.0 OD2 C:ASP11 4.2 23.6 1.0 O1B C:ADP401 4.3 13.0 1.0 O2A C:ADP401 4.3 13.0 1.0 CA C:GLY13 4.3 17.0 1.0 O3A C:ADP401 4.4 14.5 1.0 CG C:ASP11 4.6 19.8 1.0 NZ C:LYS18 4.6 12.6 1.0 CG C:GLN137 4.7 13.6 1.0 CA C:GLY156 4.8 10.5 1.0 PA C:ADP401 4.9 12.7 1.0 OD1 C:ASP154 4.9 20.3 1.0 CG C:ASP154 4.9 19.6 1.0

Magnesium binding site 4 out of 5 in the Cryoem Reconstruction of Yeast Adp-Actin Filament at 2.5 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryoem Reconstruction of Yeast Adp-Actin Filament at 2.5 A Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:17.8 occ:1.00 O2B D:ADP401 2.0 25.1 1.0 O D:HOH501 2.0 28.4 1.0 O D:HOH504 2.1 13.9 1.0 O D:HOH510 2.1 22.8 1.0 O D:HOH503 2.1 14.7 1.0 O D:HOH518 2.8 25.3 1.0 PB D:ADP401 3.3 10.6 1.0 O3B D:ADP401 3.8 11.7 1.0 OD2 D:ASP154 4.1 20.4 1.0 O D:HOH509 4.1 24.3 1.0 CD D:GLN137 4.1 20.3 1.0 OE1 D:GLN137 4.1 24.3 1.0 OD1 D:ASP11 4.1 22.6 1.0 NE2 D:GLN137 4.2 18.6 1.0 OD2 D:ASP11 4.2 23.6 1.0 O1B D:ADP401 4.3 13.0 1.0 O2A D:ADP401 4.3 13.0 1.0 CA D:GLY13 4.3 17.0 1.0 O3A D:ADP401 4.4 14.5 1.0 CG D:ASP11 4.6 19.8 1.0 NZ D:LYS18 4.6 12.6 1.0 CG D:GLN137 4.7 13.6 1.0 CA D:GLY156 4.8 10.5 1.0 PA D:ADP401 4.9 12.7 1.0 OD1 D:ASP154 4.9 20.3 1.0 CG D:ASP154 4.9 19.6 1.0

Magnesium binding site 5 out of 5 in the Cryoem Reconstruction of Yeast Adp-Actin Filament at 2.5 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryoem Reconstruction of Yeast Adp-Actin Filament at 2.5 A Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:17.8 occ:1.00 O2B E:ADP401 2.0 25.1 1.0 O E:HOH501 2.0 28.4 1.0 O E:HOH504 2.1 13.9 1.0 O E:HOH510 2.1 22.8 1.0 O E:HOH503 2.1 14.7 1.0 O E:HOH518 2.8 25.3 1.0 PB E:ADP401 3.3 10.6 1.0 O3B E:ADP401 3.8 11.7 1.0 OD2 E:ASP154 4.1 20.4 1.0 O E:HOH509 4.1 24.3 1.0 CD E:GLN137 4.1 20.3 1.0 OE1 E:GLN137 4.1 24.3 1.0 OD1 E:ASP11 4.1 22.6 1.0 NE2 E:GLN137 4.2 18.6 1.0 OD2 E:ASP11 4.2 23.6 1.0 O1B E:ADP401 4.3 13.0 1.0 O2A E:ADP401 4.3 13.0 1.0 CA E:GLY13 4.3 17.0 1.0 O3A E:ADP401 4.4 14.5 1.0 CG E:ASP11 4.6 19.8 1.0 NZ E:LYS18 4.6 12.6 1.0 CG E:GLN137 4.7 13.6 1.0 CA E:GLY156 4.8 10.5 1.0 PA E:ADP401 4.9 12.7 1.0 OD1 E:ASP154 4.9 20.3 1.0 CG E:ASP154 4.9 19.6 1.0

S.R.Stevenson, S.B.Tzokov, I.Lahiri, K.R.Ayscough, P.A.Bullough. Cryo-Em Reconstruction of Yeast Adp-Actin Filament at 2.5 Angstrom Resolution. A Comparison with Vertebrate F-Actin. Structure 2025.
ISSN: ISSN 0969-2126
PubMed: 39798573
DOI: 10.1016/J.STR.2024.12.008