Magnesium in PDB 9gup: 30S Mrna Delivery Complex (Open Head)

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 86;

Binding sites:

The binding sites of Magnesium atom in the 30S Mrna Delivery Complex (Open Head) (pdb code 9gup). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 86 binding sites of Magnesium where determined in the 30S Mrna Delivery Complex (Open Head), PDB code: 9gup:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 86 in the 30S Mrna Delivery Complex (Open Head)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 30S Mrna Delivery Complex (Open Head) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1601 b:48.4 occ:1.00 OP2 A:G953 3.8 62.5 1.0 OP1 A:U952 3.8 58.7 1.0 OP1 A:G953 4.3 62.5 1.0 O6 A:G963 4.4 59.2 1.0 P A:G953 4.4 62.5 1.0 N4 A:C962 4.5 57.7 1.0 N7 A:G963 4.7 59.2 1.0 C5 A:C962 4.8 57.7 1.0 O3' A:U952 4.8 58.7 1.0 P A:U952 4.9 58.7 1.0 N6 A:A964 4.9 63.7 1.0 O5' A:U952 4.9 58.7 1.0 C4 A:C962 5.0 57.7 1.0 C5' A:U952 5.0 58.7 1.0

Magnesium binding site 2 out of 86 in the 30S Mrna Delivery Complex (Open Head)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 30S Mrna Delivery Complex (Open Head) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1602 b:30.4 occ:1.00 OP2 A:A1110 2.2 34.1 1.0 P A:A1110 3.6 34.1 1.0 O2 A:U1189 3.6 47.7 1.0 N7 A:A1111 3.9 41.4 1.0 O5' A:A1110 4.1 34.1 1.0 OP1 A:A1110 4.3 34.1 1.0 OP2 A:C1109 4.4 32.0 1.0 N6 A:A1111 4.5 41.4 1.0 OP1 A:C1109 4.5 32.0 1.0 OP2 A:A1111 4.6 41.4 1.0 C2 A:U1189 4.6 47.7 1.0 O3' A:C1109 4.7 32.0 1.0 P A:C1109 4.8 32.0 1.0 C8 A:A1111 4.9 41.4 1.0 C8 A:A1110 4.9 34.1 1.0 C5 A:A1111 4.9 41.4 1.0 N4 A:C1112 4.9 48.7 1.0 N7 A:A1110 4.9 34.1 1.0 N3 A:U1189 5.0 47.7 1.0

Magnesium binding site 3 out of 86 in the 30S Mrna Delivery Complex (Open Head)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 30S Mrna Delivery Complex (Open Head) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1603 b:68.7 occ:1.00 O O:ALA2 3.8 68.0 1.0 OP1 A:G1048 4.0 75.9 1.0 NE2 O:GLN4 4.0 72.0 1.0 OP1 A:A1204 4.2 60.9 1.0 OP2 A:A1204 4.3 60.9 1.0 OP1 A:U1049 4.4 68.0 1.0 OP1 A:C1203 4.5 60.0 1.0 OP2 A:G1048 4.5 75.9 1.0 P A:G1048 4.7 75.9 1.0 C O:ALA2 4.7 68.0 1.0 P A:A1204 4.8 60.9 1.0

Magnesium binding site 4 out of 86 in the 30S Mrna Delivery Complex (Open Head)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of 30S Mrna Delivery Complex (Open Head) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1604 b:41.2 occ:1.00 N7 A:G1353 4.0 46.5 1.0 O6 A:G1353 4.4 46.5 1.0 O4 A:U1354 4.5 47.4 1.0 C5 A:G1353 4.8 46.5 1.0 C8 A:G1353 4.9 46.5 1.0 C6 A:G1353 4.9 46.5 1.0

Magnesium binding site 5 out of 86 in the 30S Mrna Delivery Complex (Open Head)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of 30S Mrna Delivery Complex (Open Head) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1605 b:44.5 occ:1.00 O6 A:G1222 2.0 49.5 1.0 OP2 A:C980 2.1 52.2 1.0 O4 A:U981 2.2 53.3 1.0 OP1 A:C979 2.5 50.2 1.0 C6 A:G1222 3.2 49.5 1.0 C4 A:U981 3.3 53.3 1.0 P A:C980 3.5 52.2 1.0 P A:C979 3.7 50.2 1.0 C5 A:U981 3.9 53.3 1.0 N1 A:G1222 4.1 49.5 1.0 O6 A:G1221 4.1 51.5 1.0 OP1 A:C980 4.1 52.2 1.0 O2 A:U982 4.1 54.2 1.0 O5' A:C979 4.1 50.2 1.0 OP2 A:C979 4.2 50.2 1.0 C5 A:G1222 4.2 49.5 1.0 O3' A:C979 4.4 50.2 1.0 N4 A:C1223 4.4 48.4 1.0 C5' A:C979 4.4 50.2 1.0 N3 A:U981 4.5 53.3 1.0 O5' A:C980 4.5 52.2 1.0 N7 A:G1222 4.6 49.5 1.0 C2 A:U982 4.6 54.2 1.0 O2' A:U982 4.7 54.2 1.0 N3 A:U982 4.8 54.2 1.0 C6 A:G1221 4.9 51.5 1.0 C3' A:C979 4.9 50.2 1.0 O3' A:A978 5.0 50.2 1.0

Magnesium binding site 6 out of 86 in the 30S Mrna Delivery Complex (Open Head)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of 30S Mrna Delivery Complex (Open Head) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1606 b:32.4 occ:1.00 O6 A:G1370 2.4 44.2 1.0 C6 A:G1370 3.3 44.2 1.0 N7 A:G1370 3.6 44.2 1.0 C5 A:G1370 3.8 44.2 1.0 O6 A:G1371 4.0 43.5 1.0 O4 A:U1351 4.3 47.6 1.0 N4 A:C1352 4.3 46.0 1.0 N1 A:G1370 4.5 44.2 1.0 N7 A:G1371 4.8 43.5 1.0 N4 A:C1369 4.8 45.1 1.0 C8 A:G1370 4.9 44.2 1.0 C6 A:G1371 5.0 43.5 1.0

Magnesium binding site 7 out of 86 in the 30S Mrna Delivery Complex (Open Head)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of 30S Mrna Delivery Complex (Open Head) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1607 b:59.3 occ:1.00 OP1 A:G944 2.2 78.7 1.0 OP2 A:G945 2.7 72.7 1.0 P A:G944 3.3 78.7 1.0 OP2 A:G944 3.5 78.7 1.0 P A:G945 4.1 72.7 1.0 O5' A:G944 4.1 78.7 1.0 N7 A:A946 4.2 65.5 1.0 O6 A:G947 4.5 59.6 1.0 C5' A:G944 4.5 78.7 1.0 O3' A:U943 4.6 73.4 1.0 O5' A:G945 4.7 72.7 1.0 OP1 A:G945 4.8 72.7 1.0 N6 A:A946 4.8 65.5 1.0 O6 A:G1233 4.8 58.2 1.0 OP2 A:A946 4.9 65.5 1.0 C8 A:A946 4.9 65.5 1.0 C5 A:A946 4.9 65.5 1.0

Magnesium binding site 8 out of 86 in the 30S Mrna Delivery Complex (Open Head)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of 30S Mrna Delivery Complex (Open Head) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1608 b:43.8 occ:1.00 O O:SER58 4.0 59.2 1.0 O3' A:C1359 4.2 52.5 1.0 OP1 A:A1360 4.2 51.8 1.0 O6 A:G1361 4.3 51.7 1.0 N3 A:C980 4.3 52.2 1.0 N7 A:A1360 4.4 51.8 1.0 O2 A:C980 4.5 52.2 1.0 O O:GLN60 4.7 61.8 1.0 NH1 O:ARG61 4.8 58.3 1.0 N4 A:C979 4.9 50.2 1.0 C2 A:C980 4.9 52.2 1.0 C8 A:A1360 4.9 51.8 1.0 P A:A1360 4.9 51.8 1.0 C4' A:C1359 5.0 52.5 1.0

Magnesium binding site 9 out of 86 in the 30S Mrna Delivery Complex (Open Head)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of 30S Mrna Delivery Complex (Open Head) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1609 b:26.5 occ:1.00 OP2 A:C1069 2.3 27.8 1.0 O6 A:G1094 3.4 30.0 1.0 N7 A:G1094 3.7 30.0 1.0 P A:C1069 3.8 27.8 1.0 O2 A:U1085 4.2 25.1 1.0 C6 A:G1094 4.2 30.0 1.0 C5 A:G1094 4.3 30.0 1.0 O5' A:C1069 4.5 27.8 1.0 O3' A:G1068 4.5 29.4 1.0 C3' A:G1068 4.7 29.4 1.0 OP1 A:C1069 4.7 27.8 1.0 C8 A:G1094 4.8 30.0 1.0 C5' A:G1068 4.9 29.4 1.0

Magnesium binding site 10 out of 86 in the 30S Mrna Delivery Complex (Open Head)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of 30S Mrna Delivery Complex (Open Head) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1610 b:57.9 occ:1.00 OP2 A:A1254 4.2 64.8 1.0 N7 A:A1254 4.4 64.8 1.0 N7 A:G1279 4.4 75.8 1.0 C8 A:G1279 4.6 75.8 1.0 N7 A:G1255 4.7 72.9 1.0 NE K:ARG45 4.8 63.2 1.0 CD K:ARG45 4.9 63.2 1.0 C8 A:A1254 4.9 64.8 1.0

M.W.Webster, A.Chauvier, H.Rahil, A.Graziadei, N.Miropolskaya, K.Charles, M.Takacs, C.Saintandre, J.Rappsilber, N.G.Walter, A.Weixlbaumer. Molecular Basis of Mrna Delivery to the Bacterial Ribosome Science 2024.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ADO8476