Magnesium in PDB 9gut: 30S Mrna Delivery Complex (BS1 Resolved)

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 137;

Binding sites:

The binding sites of Magnesium atom in the 30S Mrna Delivery Complex (BS1 Resolved) (pdb code 9gut). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 137 binding sites of Magnesium where determined in the 30S Mrna Delivery Complex (BS1 Resolved), PDB code: 9gut:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 137 in the 30S Mrna Delivery Complex (BS1 Resolved)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 30S Mrna Delivery Complex (BS1 Resolved) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3101 b:29.8 occ:1.00 O6 A:G963 3.8 30.1 1.0 OP1 A:U952 3.9 29.5 1.0 OP2 A:G953 3.9 30.4 1.0 N7 A:G963 4.2 30.1 1.0 OP1 A:G953 4.2 30.4 1.0 P A:G953 4.4 30.4 1.0 N4 A:C962 4.4 27.5 1.0 N6 A:A964 4.6 32.4 1.0 C6 A:G963 4.6 30.1 1.0 C5 A:C962 4.7 27.5 1.0 O3' A:U952 4.7 29.5 1.0 C5 A:G963 4.8 30.1 1.0 C4 A:C962 4.9 27.5 1.0 C5' A:U952 4.9 29.5 1.0 O5' A:U952 5.0 29.5 1.0 P A:U952 5.0 29.5 1.0

Magnesium binding site 2 out of 137 in the 30S Mrna Delivery Complex (BS1 Resolved)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 30S Mrna Delivery Complex (BS1 Resolved) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3102 b:24.2 occ:1.00 OP2 A:A1110 2.2 29.5 1.0 P A:A1110 3.4 29.5 1.0 O5' A:A1110 3.7 29.5 1.0 O2 A:U1189 3.9 32.2 1.0 N7 A:A1111 4.0 33.8 1.0 OP1 A:A1110 4.1 29.5 1.0 OP2 A:C1109 4.3 27.4 1.0 OP2 A:A1111 4.3 33.8 1.0 N7 A:A1110 4.4 29.5 1.0 C8 A:A1110 4.4 29.5 1.0 N6 A:A1111 4.5 33.8 1.0 OP1 A:C1109 4.7 27.4 1.0 O3' A:C1109 4.7 27.4 1.0 C8 A:A1111 4.8 33.8 1.0 P A:C1109 4.9 27.4 1.0 C2 A:U1189 4.9 32.2 1.0 C5 A:A1111 4.9 33.8 1.0 C5' A:A1110 5.0 29.5 1.0

Magnesium binding site 3 out of 137 in the 30S Mrna Delivery Complex (BS1 Resolved)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 30S Mrna Delivery Complex (BS1 Resolved) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3103 b:48.7 occ:1.00 N7 A:G1353 4.0 24.3 1.0 O6 A:G1353 4.2 24.3 1.0 O4 A:U1354 4.3 25.9 1.0 C5 A:G1353 4.7 24.3 1.0 C6 A:G1353 4.8 24.3 1.0 N4 A:C1352 5.0 22.5 1.0

Magnesium binding site 4 out of 137 in the 30S Mrna Delivery Complex (BS1 Resolved)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of 30S Mrna Delivery Complex (BS1 Resolved) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3104 b:22.7 occ:1.00 O6 A:G1222 1.9 16.5 1.0 O4 A:U981 2.0 22.2 1.0 OP2 A:C980 2.0 20.5 1.0 OP1 A:C979 2.8 20.2 1.0 C6 A:G1222 3.1 16.5 1.0 C4 A:U981 3.1 22.2 1.0 P A:C980 3.4 20.5 1.0 C5 A:U981 3.7 22.2 1.0 O6 A:G1221 3.8 16.8 1.0 O2 A:U982 3.9 24.1 1.0 N1 A:G1222 3.9 16.5 1.0 P A:C979 4.0 20.2 1.0 OP1 A:C980 4.0 20.5 1.0 C5 A:G1222 4.1 16.5 1.0 N4 A:C1223 4.2 19.4 1.0 N3 A:U981 4.2 22.2 1.0 O5' A:C979 4.2 20.2 1.0 O3' A:C979 4.3 20.2 1.0 O5' A:C980 4.4 20.5 1.0 C5' A:C979 4.4 20.2 1.0 OP2 A:C979 4.4 20.2 1.0 N7 A:G1222 4.5 16.5 1.0 C2 A:U982 4.5 24.1 1.0 O2' A:U982 4.6 24.1 1.0 N3 A:U982 4.7 24.1 1.0 C6 A:G1221 4.7 16.8 1.0 C3' A:C979 4.9 20.2 1.0 C4 A:C1223 5.0 19.4 1.0

Magnesium binding site 5 out of 137 in the 30S Mrna Delivery Complex (BS1 Resolved)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of 30S Mrna Delivery Complex (BS1 Resolved) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3105 b:42.5 occ:1.00 O6 A:G1370 2.2 23.0 1.0 C6 A:G1370 3.1 23.0 1.0 N7 A:G1370 3.7 23.0 1.0 C5 A:G1370 3.7 23.0 1.0 N1 A:G1370 4.2 23.0 1.0 O6 A:G1371 4.3 19.9 1.0 O4 A:U1351 4.4 24.7 1.0 N4 A:C1352 4.4 22.5 1.0 N7 A:G1371 4.7 19.9 1.0 N4 A:C1369 4.7 22.8 1.0 C8 A:G1370 4.9 23.0 1.0 C4 A:G1370 5.0 23.0 1.0

Magnesium binding site 6 out of 137 in the 30S Mrna Delivery Complex (BS1 Resolved)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of 30S Mrna Delivery Complex (BS1 Resolved) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3106 b:26.5 occ:1.00 OP1 A:G944 2.1 34.4 1.0 OP2 A:G945 2.6 31.8 1.0 P A:G944 3.2 34.4 1.0 OP2 A:G944 3.6 34.4 1.0 O5' A:G944 3.9 34.4 1.0 P A:G945 4.0 31.8 1.0 MG A:MG3203 4.3 32.4 1.0 C5' A:G944 4.3 34.4 1.0 O6 A:G947 4.4 25.5 1.0 N7 A:A946 4.4 28.5 1.0 O3' A:U943 4.6 34.6 1.0 O5' A:G945 4.6 31.8 1.0 OP1 A:G945 4.7 31.8 1.0 O6 A:G1233 4.7 26.8 1.0 N6 A:A946 4.9 28.5 1.0

Magnesium binding site 7 out of 137 in the 30S Mrna Delivery Complex (BS1 Resolved)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of 30S Mrna Delivery Complex (BS1 Resolved) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3107 b:42.5 occ:1.00 O6 A:G1361 4.0 24.7 1.0 O O:SER58 4.2 28.2 1.0 O2 A:C980 4.2 20.5 1.0 N3 A:C980 4.3 20.5 1.0 O3' A:C1359 4.3 26.5 1.0 OP1 A:A1360 4.5 24.2 1.0 N7 A:A1360 4.5 24.2 1.0 C2 A:C980 4.7 20.5 1.0 NH1 O:ARG61 4.7 28.7 1.0 N4 A:C979 4.8 20.2 1.0 O O:GLN60 4.8 29.3 1.0 CD O:ARG61 4.9 28.7 1.0 C4' A:C1359 5.0 26.5 1.0

Magnesium binding site 8 out of 137 in the 30S Mrna Delivery Complex (BS1 Resolved)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of 30S Mrna Delivery Complex (BS1 Resolved) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3108 b:27.4 occ:1.00 N2 A:G1279 3.3 38.0 1.0 C2 A:G1279 3.8 38.0 1.0 N1 A:G1279 4.3 38.0 1.0 N7 A:A1254 4.3 29.3 1.0 N3 A:G1279 4.3 38.0 1.0 CD K:ARG45 4.5 36.5 1.0 OP2 A:A1254 4.6 29.3 1.0 N7 A:G1255 4.6 36.3 1.0 O6 A:G1255 4.8 36.3 1.0 CG K:ARG45 4.9 36.5 1.0 C8 A:A1254 4.9 29.3 1.0 NE K:ARG45 5.0 36.5 1.0 N6 A:A1254 5.0 29.3 1.0

Magnesium binding site 9 out of 137 in the 30S Mrna Delivery Complex (BS1 Resolved)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of 30S Mrna Delivery Complex (BS1 Resolved) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3109 b:39.5 occ:1.00 OP2 A:A1238 2.5 32.7 1.0 O2 A:U1335 3.0 35.9 1.0 O5' A:A1238 3.4 32.7 1.0 P A:A1238 3.5 32.7 1.0 O4 A:U1301 3.7 38.1 1.0 C2 A:A1299 4.1 42.7 1.0 N2 A:G1300 4.1 36.5 1.0 C2 A:U1335 4.2 35.9 1.0 O3' A:C1237 4.2 30.3 1.0 C4 A:U1301 4.4 38.1 1.0 N3 A:A1299 4.5 42.7 1.0 C5' A:A1238 4.6 32.7 1.0 O2' A:U1335 4.7 35.9 1.0 C1' A:U1335 4.8 35.9 1.0 C2 A:G1300 4.8 36.5 1.0 OP1 A:A1238 4.8 32.7 1.0 N3 A:U1301 5.0 38.1 1.0 C8 A:A1238 5.0 32.7 1.0

Magnesium binding site 10 out of 137 in the 30S Mrna Delivery Complex (BS1 Resolved)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of 30S Mrna Delivery Complex (BS1 Resolved) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3110 b:31.3 occ:1.00 OP2 A:C1051 4.0 36.3 1.0 OP2 A:U1052 4.0 34.0 1.0 OP1 A:C1200 4.2 30.2 1.0 OP1 A:C1051 4.4 36.3 1.0 O2' A:C962 4.6 27.5 1.0 P A:C1051 4.6 36.3 1.0 OP1 A:A1201 4.9 32.8 1.0 OP2 A:C1200 5.0 30.2 1.0 P A:C1200 5.0 30.2 1.0

M.W.Webster, A.Chauvier, H.Rahil, A.Graziadei, N.Miropolskaya, K.Charles, M.Takacs, C.Saintandre, J.Rappsilber, N.G.Walter, A.Weixlbaumer. Molecular Basis of Mrna Delivery to the Bacterial Ribosome Science 2024.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ADO8476