Magnesium in PDB 9guw: 30S-Tec (Tec in Expressome Position) Inactive State 2

All present enzymatic activity of 30S-Tec (Tec in Expressome Position) Inactive State 2:
2.7.7.6;

The structure of 30S-Tec (Tec in Expressome Position) Inactive State 2 also contains other interesting chemical elements:

Zinc

(Zn)

3 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 118;

Binding sites:

The binding sites of Magnesium atom in the 30S-Tec (Tec in Expressome Position) Inactive State 2 (pdb code 9guw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 118 binding sites of Magnesium where determined in the 30S-Tec (Tec in Expressome Position) Inactive State 2, PDB code: 9guw:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 118 in the 30S-Tec (Tec in Expressome Position) Inactive State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 30S-Tec (Tec in Expressome Position) Inactive State 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1601 b:34.6 occ:1.00 OP2 A:G953 3.8 29.9 1.0 OP1 A:G953 4.1 29.9 1.0 OP1 A:U952 4.3 28.5 1.0 P A:G953 4.4 29.9 1.0 O6 A:G963 4.7 26.8 1.0 C5 A:C962 4.8 25.3 1.0 N4 A:C962 4.8 25.3 1.0 N7 A:G963 4.8 26.8 1.0 N6 A:A964 4.9 29.7 1.0 O3' A:U952 4.9 28.5 1.0

Magnesium binding site 2 out of 118 in the 30S-Tec (Tec in Expressome Position) Inactive State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 30S-Tec (Tec in Expressome Position) Inactive State 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1602 b:21.4 occ:1.00 OP2 A:A1110 2.1 29.8 1.0 O2 A:U1189 3.3 29.7 1.0 P A:A1110 3.4 29.8 1.0 OP1 A:A1110 4.1 29.8 1.0 OP1 A:C1109 4.1 28.5 1.0 O5' A:A1110 4.1 29.8 1.0 C2 A:U1189 4.3 29.7 1.0 N3 A:U1189 4.6 29.7 1.0 O3' A:C1109 4.6 28.5 1.0 OP2 A:C1109 4.7 28.5 1.0 P A:C1109 4.7 28.5 1.0 OP2 A:A1111 4.8 31.4 1.0 O5' A:C1109 4.9 28.5 1.0 N7 A:A1111 4.9 31.4 1.0

Magnesium binding site 3 out of 118 in the 30S-Tec (Tec in Expressome Position) Inactive State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 30S-Tec (Tec in Expressome Position) Inactive State 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1603 b:21.5 occ:1.00 OP1 A:G1048 3.9 32.3 1.0 O O:ALA2 4.0 30.9 1.0 NE2 O:GLN4 4.3 31.8 1.0 OP1 A:A1204 4.4 26.7 1.0 OP2 A:A1204 4.4 26.7 1.0 OP1 A:C1203 4.6 26.8 1.0 OP2 A:G1048 4.7 32.3 1.0 OP1 A:U1049 4.7 28.8 1.0 P A:G1048 4.8 32.3 1.0 P A:A1204 4.9 26.7 1.0 CG O:GLN4 4.9 31.8 1.0 C O:ALA2 5.0 30.9 1.0

Magnesium binding site 4 out of 118 in the 30S-Tec (Tec in Expressome Position) Inactive State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of 30S-Tec (Tec in Expressome Position) Inactive State 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1604 b:36.5 occ:1.00 O4 A:U1354 3.9 24.1 1.0 O6 A:G1353 4.1 24.2 1.0 N7 A:G1353 4.2 24.2 1.0 C6 A:G1353 4.7 24.2 1.0 C5 A:G1353 4.8 24.2 1.0 C4 A:U1354 5.0 24.1 1.0

Magnesium binding site 5 out of 118 in the 30S-Tec (Tec in Expressome Position) Inactive State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of 30S-Tec (Tec in Expressome Position) Inactive State 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1605 b:24.6 occ:1.00 O6 A:G1222 2.0 21.4 1.0 O4 A:U981 2.1 21.7 1.0 OP2 A:C980 2.1 21.4 1.0 OP1 A:C979 2.3 21.9 1.0 O5' A:C979 3.0 21.9 1.0 P A:C979 3.1 21.9 1.0 C6 A:G1222 3.2 21.4 1.0 C4 A:U981 3.2 21.7 1.0 P A:C980 3.6 21.4 1.0 C5' A:C979 3.9 21.9 1.0 OP2 A:C979 3.9 21.9 1.0 C5 A:U981 4.0 21.7 1.0 N4 A:C1223 4.0 21.6 1.0 N1 A:G1222 4.1 21.4 1.0 O3' A:C979 4.1 21.9 1.0 N3 A:U981 4.3 21.7 1.0 C5 A:G1222 4.3 21.4 1.0 O3' A:A978 4.4 23.4 1.0 OP1 A:C980 4.5 21.4 1.0 O2 A:U982 4.5 22.3 1.0 C3' A:C979 4.5 21.9 1.0 O5' A:C980 4.6 21.4 1.0 N7 A:G1222 4.6 21.4 1.0 C5 A:C980 4.7 21.4 1.0 N3 A:U982 4.7 22.3 1.0 O6 A:G1221 4.7 22.2 1.0 O2' A:A977 4.8 22.4 1.0 C4' A:C979 4.8 21.9 1.0 C2 A:U982 4.8 22.3 1.0 C4 A:C1223 4.9 21.6 1.0

Magnesium binding site 6 out of 118 in the 30S-Tec (Tec in Expressome Position) Inactive State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of 30S-Tec (Tec in Expressome Position) Inactive State 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1606 b:20.7 occ:1.00 O6 A:G1370 2.2 22.9 1.0 C6 A:G1370 3.0 22.9 1.0 N7 A:G1370 3.1 22.9 1.0 C5 A:G1370 3.3 22.9 1.0 O6 A:G1371 4.0 23.3 1.0 N1 A:G1370 4.3 22.9 1.0 N4 A:C1352 4.4 24.1 1.0 C8 A:G1370 4.4 22.9 1.0 O4 A:U1351 4.5 25.8 1.0 N7 A:G1371 4.6 23.3 1.0 C4 A:G1370 4.7 22.9 1.0 N4 A:C1369 4.8 22.8 1.0 C6 A:G1371 5.0 23.3 1.0

Magnesium binding site 7 out of 118 in the 30S-Tec (Tec in Expressome Position) Inactive State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of 30S-Tec (Tec in Expressome Position) Inactive State 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1607 b:30.0 occ:1.00 OP1 A:G944 1.9 32.8 1.0 OP2 A:G945 2.0 32.3 1.0 P A:G944 2.8 32.8 1.0 OP2 A:G944 3.2 32.8 1.0 O5' A:G944 3.4 32.8 1.0 P A:G945 3.4 32.3 1.0 C5' A:G944 3.9 32.8 1.0 O5' A:G945 4.0 32.3 1.0 O3' A:U943 4.3 32.4 1.0 OP1 A:G945 4.3 32.3 1.0 N7 A:A946 4.5 29.4 1.0 O3' A:G944 4.5 32.8 1.0 C3' A:G944 4.6 32.8 1.0 OP2 A:A946 4.8 29.4 1.0 N7 A:G945 4.8 32.3 1.0 C4' A:G944 4.8 32.8 1.0

Magnesium binding site 8 out of 118 in the 30S-Tec (Tec in Expressome Position) Inactive State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of 30S-Tec (Tec in Expressome Position) Inactive State 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1608 b:52.9 occ:1.00 O6 A:G1361 4.2 23.7 1.0 O3' A:C1359 4.2 23.2 1.0 N7 A:A1360 4.5 24.2 1.0 O O:SER58 4.6 28.3 1.0 O2 A:C980 4.6 21.4 1.0 O O:GLN60 4.6 27.6 1.0 NH1 O:ARG61 4.6 25.6 1.0 OP1 A:A1360 4.7 24.2 1.0 C4' A:C1359 4.7 23.2 1.0 C5' A:C1359 4.8 23.2 1.0 N4 A:C979 4.9 21.9 1.0

Magnesium binding site 9 out of 118 in the 30S-Tec (Tec in Expressome Position) Inactive State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of 30S-Tec (Tec in Expressome Position) Inactive State 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1609 b:33.1 occ:1.00 N2 A:G1279 2.4 38.0 1.0 C2 A:G1279 3.4 38.0 1.0 N3 A:G1279 4.0 38.0 1.0 N1 A:G1279 4.2 38.0 1.0 N7 A:A1254 4.5 32.4 1.0 CD K:ARG45 4.6 34.1 1.0 OP2 A:A1254 4.7 32.4 1.0 NE K:ARG45 4.8 34.1 1.0 O6 A:G1255 5.0 36.8 1.0 N7 A:G1255 5.0 36.8 1.0

Magnesium binding site 10 out of 118 in the 30S-Tec (Tec in Expressome Position) Inactive State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of 30S-Tec (Tec in Expressome Position) Inactive State 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1610 b:42.6 occ:1.00 O5' A:A1238 1.9 37.6 1.0 OP2 A:A1238 2.0 37.6 1.0 P A:A1238 2.4 37.6 1.0 C5' A:A1238 3.0 37.6 1.0 O2' A:U1335 3.4 36.6 1.0 OP1 A:A1238 3.5 37.6 1.0 O3' A:C1237 3.6 33.6 1.0 C4' A:A1238 4.3 37.6 1.0 O4' A:A1238 4.4 37.6 1.0 O2 A:U1335 4.5 36.6 1.0 C2' A:U1335 4.5 36.6 1.0 C1' A:U1335 4.6 36.6 1.0 O4 A:U1301 4.7 39.5 1.0 C3' A:C1237 4.8 33.6 1.0 O2' A:C1237 4.8 33.6 1.0 C2 A:A1299 4.9 43.0 1.0

M.W.Webster, A.Chauvier, H.Rahil, A.Graziadei, N.Miropolskaya, K.Charles, M.Takacs, C.Saintandre, J.Rappsilber, N.G.Walter, A.Weixlbaumer. Molecular Basis of Mrna Delivery to the Bacterial Ribosome Science 2024.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ADO8476