Magnesium in PDB 9gux: 30S-Tec (Tec in Expressome Position) Inactive State 1

All present enzymatic activity of 30S-Tec (Tec in Expressome Position) Inactive State 1:
2.7.7.6;

The structure of 30S-Tec (Tec in Expressome Position) Inactive State 1 also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 132;

Binding sites:

The binding sites of Magnesium atom in the 30S-Tec (Tec in Expressome Position) Inactive State 1 (pdb code 9gux). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 132 binding sites of Magnesium where determined in the 30S-Tec (Tec in Expressome Position) Inactive State 1, PDB code: 9gux:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 132 in the 30S-Tec (Tec in Expressome Position) Inactive State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 30S-Tec (Tec in Expressome Position) Inactive State 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1601 b:31.6 occ:1.00 OP2 A:G953 3.9 57.1 1.0 OP1 A:U952 4.1 51.7 1.0 OP1 A:G953 4.1 57.1 1.0 O6 A:G963 4.3 51.2 1.0 P A:G953 4.4 57.1 1.0 N7 A:G963 4.4 51.2 1.0 N4 A:C962 4.5 50.7 1.0 N6 A:A964 4.6 55.1 1.0 O3' A:U952 4.7 51.7 1.0 C5 A:C962 4.8 50.7 1.0 C4 A:C962 4.9 50.7 1.0

Magnesium binding site 2 out of 132 in the 30S-Tec (Tec in Expressome Position) Inactive State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 30S-Tec (Tec in Expressome Position) Inactive State 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1602 b:69.0 occ:1.00 OP2 A:A1110 2.0 24.1 1.0 P A:A1110 3.3 24.1 1.0 O5' A:A1110 3.7 24.1 1.0 O2 A:U1189 3.9 39.5 1.0 OP1 A:A1110 4.2 24.1 1.0 N7 A:A1111 4.2 35.2 1.0 OP1 A:C1109 4.3 23.9 1.0 OP2 A:C1109 4.4 23.9 1.0 O3' A:C1109 4.4 23.9 1.0 OP2 A:A1111 4.5 35.2 1.0 C8 A:A1110 4.5 24.1 1.0 N7 A:A1110 4.6 24.1 1.0 P A:C1109 4.6 23.9 1.0 O5' A:C1109 4.7 23.9 1.0 C3' A:C1109 4.8 23.9 1.0 C2 A:U1189 4.9 39.5 1.0 C5' A:A1110 5.0 24.1 1.0

Magnesium binding site 3 out of 132 in the 30S-Tec (Tec in Expressome Position) Inactive State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 30S-Tec (Tec in Expressome Position) Inactive State 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1603 b:30.8 occ:1.00 O O:ALA2 3.6 54.0 1.0 NE2 O:GLN4 4.1 62.3 1.0 OP1 A:G1048 4.2 59.5 1.0 OP2 A:A1204 4.3 50.4 1.0 OP1 A:C1203 4.4 50.5 1.0 OP1 A:A1204 4.4 50.4 1.0 C O:ALA2 4.5 54.0 1.0 OP1 A:U1049 4.7 53.1 1.0 P A:A1204 4.9 50.4 1.0 OP2 A:G1048 4.9 59.5 1.0 CA O:LYS3 5.0 57.0 1.0

Magnesium binding site 4 out of 132 in the 30S-Tec (Tec in Expressome Position) Inactive State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of 30S-Tec (Tec in Expressome Position) Inactive State 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1604 b:70.8 occ:1.00 O6 A:G1353 4.1 51.2 1.0 N7 A:G1353 4.3 51.2 1.0 O4 A:U1354 4.5 53.1 1.0 C6 A:G1353 4.8 51.2 1.0 C5 A:G1353 4.9 51.2 1.0

Magnesium binding site 5 out of 132 in the 30S-Tec (Tec in Expressome Position) Inactive State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of 30S-Tec (Tec in Expressome Position) Inactive State 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1605 b:44.8 occ:1.00 OP2 A:C980 1.8 48.7 1.0 O6 A:G1222 1.9 46.1 1.0 O4 A:U981 2.0 47.9 1.0 OP1 A:C979 2.3 48.7 1.0 MG A:MG1694 3.0 44.7 1.0 C6 A:G1222 3.1 46.1 1.0 C4 A:U981 3.1 47.9 1.0 P A:C980 3.3 48.7 1.0 P A:C979 3.5 48.7 1.0 C5 A:U981 3.7 47.9 1.0 N1 A:G1222 3.8 46.1 1.0 O5' A:C979 3.9 48.7 1.0 OP1 A:C980 4.0 48.7 1.0 OP2 A:C979 4.0 48.7 1.0 N4 A:C1223 4.1 47.4 1.0 O2 A:U982 4.1 45.7 1.0 O3' A:C979 4.1 48.7 1.0 C5' A:C979 4.2 48.7 1.0 C5 A:G1222 4.2 46.1 1.0 O5' A:C980 4.3 48.7 1.0 N3 A:U981 4.3 47.9 1.0 O6 A:G1221 4.5 47.5 1.0 N3 A:U982 4.6 45.7 1.0 C2 A:U982 4.6 45.7 1.0 C3' A:C979 4.6 48.7 1.0 N7 A:G1222 4.7 46.1 1.0 O2' A:U982 4.8 45.7 1.0 O3' A:A978 4.8 49.2 1.0 C4 A:C1223 4.9 47.4 1.0 C4' A:C979 4.9 48.7 1.0

Magnesium binding site 6 out of 132 in the 30S-Tec (Tec in Expressome Position) Inactive State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of 30S-Tec (Tec in Expressome Position) Inactive State 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1606 b:36.4 occ:1.00 O6 A:G1370 2.3 48.2 1.0 C6 A:G1370 3.2 48.2 1.0 N7 A:G1370 3.5 48.2 1.0 C5 A:G1370 3.6 48.2 1.0 O6 A:G1371 3.8 48.2 1.0 N1 A:G1370 4.3 48.2 1.0 N4 A:C1352 4.4 48.9 1.0 O4 A:U1351 4.4 52.3 1.0 N7 A:G1371 4.6 48.2 1.0 C8 A:G1370 4.7 48.2 1.0 C6 A:G1371 4.8 48.2 1.0 C4 A:G1370 4.9 48.2 1.0 N4 A:C1369 4.9 47.4 1.0

Magnesium binding site 7 out of 132 in the 30S-Tec (Tec in Expressome Position) Inactive State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of 30S-Tec (Tec in Expressome Position) Inactive State 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1607 b:69.0 occ:1.00 OP1 A:G944 2.2 57.6 1.0 OP2 A:G945 2.4 58.6 1.0 P A:G944 3.2 57.6 1.0 OP2 A:G944 3.4 57.6 1.0 P A:G945 3.8 58.6 1.0 O5' A:G944 3.9 57.6 1.0 N7 A:A946 4.1 59.0 1.0 O5' A:G945 4.3 58.6 1.0 C5' A:G944 4.4 57.6 1.0 O3' A:U943 4.5 54.8 1.0 OP2 A:A946 4.5 59.0 1.0 OP1 A:G945 4.6 58.6 1.0 O6 A:G947 4.7 57.3 1.0 C8 A:A946 4.9 59.0 1.0 N6 A:A946 4.9 59.0 1.0 O3' A:G944 4.9 57.6 1.0 C5 A:A946 5.0 59.0 1.0

Magnesium binding site 8 out of 132 in the 30S-Tec (Tec in Expressome Position) Inactive State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of 30S-Tec (Tec in Expressome Position) Inactive State 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1608 b:27.9 occ:1.00 O O:SER58 3.8 49.4 1.0 O O:GLN60 4.2 54.7 1.0 N3 A:C980 4.3 48.7 1.0 OP1 A:A1360 4.3 50.5 1.0 NH1 O:ARG61 4.3 49.3 1.0 O3' A:C1359 4.4 49.1 1.0 N7 A:A1360 4.4 50.5 1.0 O6 A:G1361 4.5 50.5 1.0 O2 A:C980 4.6 48.7 1.0 C2 A:C980 4.8 48.7 1.0 C8 A:A1360 4.9 50.5 1.0 C O:SER58 5.0 49.4 1.0 N4 A:C979 5.0 48.7 1.0

Magnesium binding site 9 out of 132 in the 30S-Tec (Tec in Expressome Position) Inactive State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of 30S-Tec (Tec in Expressome Position) Inactive State 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1609 b:40.9 occ:1.00 N2 A:G1279 3.4 72.3 1.0 OP2 A:A1254 3.6 63.6 1.0 N7 A:A1254 4.1 63.6 1.0 C2 A:G1279 4.1 72.3 1.0 CD K:ARG45 4.4 51.2 1.0 CG K:ARG45 4.5 51.2 1.0 NE K:ARG45 4.6 51.2 1.0 N3 A:G1279 4.7 72.3 1.0 C8 A:A1254 4.7 63.6 1.0 N1 A:G1279 4.8 72.3 1.0

Magnesium binding site 10 out of 132 in the 30S-Tec (Tec in Expressome Position) Inactive State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of 30S-Tec (Tec in Expressome Position) Inactive State 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1610 b:65.6 occ:1.00 O2 A:U1335 3.0 70.3 1.0 OP2 A:A1238 3.0 66.8 1.0 O5' A:A1238 3.5 66.8 1.0 P A:A1238 3.9 66.8 1.0 C2 A:A1299 3.9 74.5 1.0 C2 A:U1335 4.2 70.3 1.0 O4 A:U1301 4.2 71.4 1.0 O2' A:U1335 4.5 70.3 1.0 N3 A:A1299 4.6 74.5 1.0 C1' A:U1335 4.6 70.3 1.0 O3' A:C1237 4.6 65.9 1.0 N1 A:A1299 4.7 74.5 1.0 C5' A:A1238 4.7 66.8 1.0 C4 A:U1301 4.9 71.4 1.0 N1 A:U1335 5.0 70.3 1.0 N2 A:G1300 5.0 69.7 1.0

M.W.Webster, A.Chauvier, H.Rahil, A.Graziadei, N.Miropolskaya, K.Charles, M.Takacs, C.Saintandre, J.Rappsilber, N.G.Walter, A.Weixlbaumer. Molecular Basis of Mrna Delivery to the Bacterial Ribosome Science 2024.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ADO8476