Magnesium in PDB 9gvk: Cryo-Em Structure of Endogenous Atp-Bound Lolcde with Lold-E171Q Mutations in Nanodiscs

The binding sites of Magnesium atom in the Cryo-Em Structure of Endogenous Atp-Bound Lolcde with Lold-E171Q Mutations in Nanodiscs (pdb code 9gvk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Endogenous Atp-Bound Lolcde with Lold-E171Q Mutations in Nanodiscs, PDB code: 9gvk:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Endogenous Atp-Bound Lolcde with Lold-E171Q Mutations in Nanodiscs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Endogenous Atp-Bound Lolcde with Lold-E171Q Mutations in Nanodiscs within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg301 b:20.0 occ:1.00 OE1 D:GLN94 2.0 50.9 1.0 O2B F:ATP601 2.0 57.0 1.0 CB D:SER49 2.6 42.9 1.0 CD D:GLN94 3.2 38.0 1.0 O3G F:ATP601 3.3 65.1 1.0 OG D:SER49 3.4 51.4 1.0 PB F:ATP601 3.4 48.8 1.0 O2A F:ATP601 3.4 59.0 1.0 O3B F:ATP601 3.6 61.0 1.0 NE2 D:GLN94 3.7 37.1 1.0 CA D:SER49 3.8 30.4 1.0 N D:SER49 4.0 41.3 1.0 O3A F:ATP601 4.0 58.1 1.0 OD1 D:ASP170 4.0 59.8 1.0 PG F:ATP601 4.2 79.2 1.0 PA F:ATP601 4.2 60.2 1.0 OD2 D:ASP170 4.3 62.2 1.0 CG D:GLN94 4.4 33.8 1.0 O1B F:ATP601 4.5 50.4 1.0 N F:GLY148 4.5 49.5 1.0 CG D:ASP170 4.6 57.1 1.0 CB D:GLN94 4.6 37.6 1.0 O1A F:ATP601 4.6 59.0 1.0 O2G F:ATP601 4.9 63.2 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Endogenous Atp-Bound Lolcde with Lold-E171Q Mutations in Nanodiscs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Endogenous Atp-Bound Lolcde with Lold-E171Q Mutations in Nanodiscs within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg603 b:20.0 occ:1.00 OE1 F:GLN94 2.0 51.8 1.0 CB F:SER49 2.7 42.0 1.0 OG F:SER49 3.0 53.9 1.0 CD F:GLN94 3.1 42.3 1.0 O3G F:ATP602 3.1 56.9 1.0 O2B F:ATP602 3.2 55.7 1.0 O1G F:ATP602 3.2 56.3 1.0 PG F:ATP602 3.5 58.6 1.0 NE2 F:GLN94 3.5 39.4 1.0 O3A F:ATP602 3.6 48.7 1.0 O3B F:ATP602 3.7 57.9 1.0 PB F:ATP602 3.8 51.1 1.0 OD2 F:ASP170 4.0 49.8 1.0 CA F:SER49 4.0 38.2 1.0 N F:SER49 4.2 44.1 1.0 OD1 F:ASP170 4.3 57.8 1.0 CG F:GLN94 4.3 35.5 1.0 N D:GLY148 4.3 48.0 1.0 CG F:ASP170 4.5 49.4 1.0 CB F:GLN94 4.6 29.3 1.0 PA F:ATP602 4.6 53.6 1.0 O2A F:ATP602 4.7 60.0 1.0 CA D:GLY148 4.8 40.5 1.0 O1A F:ATP602 5.0 60.6 1.0

H.Dong, C.Shen, X.Tang, W.Qiao. Cryo-Em Structure of Endogenous Atp-Bound Lolcde with Lold-E171Q Mutations in Nanodiscs To Be Published.