Magnesium in PDB 9iuy: Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms

Enzymatic activity of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms

All present enzymatic activity of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms:
1.16.3.1;

Other elements in 9iuy:

The structure of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms also contains other interesting chemical elements:

Iron (Fe) 6 atoms
Potassium (K) 24 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms (pdb code 9iuy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 32 binding sites of Magnesium where determined in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms, PDB code: 9iuy:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 32 in 9iuy

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Magnesium binding site 1 out of 32 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:21.2
occ:1.00
 O A:HOH336 2.1 13.8 1.0
ND1 A:HIS65 2.2 11.1 1.0
O A:HOH304 2.3 18.3 1.0
OE1 A:GLU62 2.3 13.7 1.0
OE1 A:GLU27 2.3 15.1 1.0
CD A:GLU62 3.0 5.5 1.0
CE1 A:HIS65 3.1 7.9 1.0
OE2 A:GLU62 3.1 16.8 1.0
CG A:HIS65 3.2 5.5 1.0
CD A:GLU27 3.2 4.9 1.0
OE2 A:GLU27 3.5 12.8 1.0
OE1 A:GLN141 3.6 17.2 1.0
CB A:HIS65 3.6 3.8 1.0
O A:HOH349 3.7 14.6 1.0
NE2 A:HIS65 4.2 13.4 1.0
CD2 A:HIS65 4.3 8.1 1.0
O A:HOH325 4.3 15.3 1.0
CG A:GLU62 4.4 4.3 1.0
CA A:GLU62 4.4 0.0 1.0
CG1 A:VAL110 4.5 4.4 1.0
CD A:GLN141 4.6 7.0 1.0
CG A:GLU27 4.6 3.3 1.0
O A:HOH401 4.7 18.0 1.0
CB A:GLU62 4.7 2.5 1.0
O A:HOH320 4.8 14.7 1.0
CB A:GLU27 5.0 1.2 1.0

Magnesium binding site 2 out of 32 in 9iuy

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Magnesium binding site 2 out of 32 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg204

b:25.7
occ:1.00
 OE1 A:GLU134 2.5 15.4 1.0
OE1 F:GLU134 2.5 15.4 1.0
OE1 T:GLU134 2.5 15.4 1.0
O A:HOH335 2.8 17.1 1.0
O F:HOH335 2.8 14.6 1.0
O T:HOH335 2.8 13.0 1.0
CD A:GLU134 3.5 8.2 1.0
CD F:GLU134 3.5 8.2 1.0
CD T:GLU134 3.5 8.2 1.0
OD1 A:ASP131 3.9 15.3 1.0
OD1 F:ASP131 3.9 15.3 1.0
OD1 T:ASP131 3.9 15.3 1.0
OE2 A:GLU134 4.0 15.8 1.0
OE2 F:GLU134 4.0 15.8 1.0
OE2 T:GLU134 4.0 15.8 1.0
O A:HOH315 4.7 15.2 1.0
O F:HOH315 4.7 12.6 1.0
O T:HOH315 4.7 12.1 1.0
CG A:GLU134 4.8 5.9 1.0
CG F:GLU134 4.8 5.9 1.0
CG T:GLU134 4.8 5.9 1.0
CG A:ASP131 4.8 7.2 1.0
CG F:ASP131 4.8 7.2 1.0
CG T:ASP131 4.8 7.2 1.0
CA A:ASP131 4.9 4.4 1.0
CA F:ASP131 4.9 4.4 1.0
CA T:ASP131 4.9 4.4 1.0
CB A:GLU134 4.9 4.1 1.0
CB F:GLU134 4.9 4.1 1.0
CB T:GLU134 4.9 4.1 1.0
CB A:ASP131 4.9 6.1 1.0
CB F:ASP131 4.9 6.1 1.0
CB T:ASP131 4.9 6.1 1.0

Magnesium binding site 3 out of 32 in 9iuy

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Magnesium binding site 3 out of 32 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg201

b:21.2
occ:1.00
 O B:HOH336 2.1 13.8 1.0
ND1 B:HIS65 2.2 11.1 1.0
O B:HOH304 2.3 18.3 1.0
OE1 B:GLU62 2.3 13.7 1.0
OE1 B:GLU27 2.3 15.1 1.0
CD B:GLU62 3.0 5.5 1.0
CE1 B:HIS65 3.1 7.9 1.0
OE2 B:GLU62 3.1 16.8 1.0
CG B:HIS65 3.2 5.5 1.0
CD B:GLU27 3.2 4.9 1.0
OE2 B:GLU27 3.5 12.8 1.0
OE1 B:GLN141 3.6 17.2 1.0
CB B:HIS65 3.6 3.8 1.0
O B:HOH349 3.7 14.6 1.0
NE2 B:HIS65 4.2 13.4 1.0
CD2 B:HIS65 4.3 8.1 1.0
O B:HOH325 4.3 15.3 1.0
CG B:GLU62 4.4 4.3 1.0
CA B:GLU62 4.4 0.0 1.0
CG1 B:VAL110 4.5 4.4 1.0
CD B:GLN141 4.6 7.0 1.0
CG B:GLU27 4.6 3.3 1.0
O B:HOH401 4.7 18.0 1.0
CB B:GLU62 4.7 2.5 1.0
O B:HOH320 4.8 14.7 1.0
CB B:GLU27 5.0 1.2 1.0

Magnesium binding site 4 out of 32 in 9iuy

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Magnesium binding site 4 out of 32 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg204

b:25.8
occ:1.00
 OE1 B:GLU134 2.5 15.4 1.0
OE1 U:GLU134 2.5 15.4 1.0
OE1 W:GLU134 2.5 15.4 1.0
O B:HOH335 2.8 17.1 1.0
O W:HOH335 2.8 12.4 1.0
O U:HOH335 2.8 12.5 1.0
CD B:GLU134 3.5 8.2 1.0
CD U:GLU134 3.5 8.2 1.0
CD W:GLU134 3.5 8.2 1.0
OD1 B:ASP131 3.9 15.3 1.0
OD1 U:ASP131 3.9 15.3 1.0
OD1 W:ASP131 3.9 15.3 1.0
OE2 W:GLU134 4.0 15.8 1.0
OE2 U:GLU134 4.0 15.8 1.0
OE2 B:GLU134 4.0 15.8 1.0
O B:HOH315 4.7 15.2 1.0
O U:HOH315 4.7 12.1 1.0
O W:HOH315 4.7 11.6 1.0
CG B:GLU134 4.8 5.9 1.0
CG U:GLU134 4.8 5.9 1.0
CG W:GLU134 4.8 5.9 1.0
CG B:ASP131 4.8 7.2 1.0
CG U:ASP131 4.8 7.2 1.0
CG W:ASP131 4.8 7.2 1.0
CA B:ASP131 4.9 4.4 1.0
CA U:ASP131 4.9 4.4 1.0
CA W:ASP131 4.9 4.4 1.0
CB B:GLU134 4.9 4.1 1.0
CB U:GLU134 4.9 4.1 1.0
CB W:GLU134 4.9 4.1 1.0
CB B:ASP131 4.9 6.1 1.0
CB U:ASP131 4.9 6.1 1.0
CB W:ASP131 4.9 6.1 1.0

Magnesium binding site 5 out of 32 in 9iuy

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Magnesium binding site 5 out of 32 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg201

b:21.2
occ:1.00
 O C:HOH336 2.1 13.8 1.0
ND1 C:HIS65 2.2 11.1 1.0
O C:HOH304 2.3 18.3 1.0
OE1 C:GLU62 2.3 13.7 1.0
OE1 C:GLU27 2.3 15.1 1.0
CD C:GLU62 3.0 5.5 1.0
CE1 C:HIS65 3.1 7.9 1.0
OE2 C:GLU62 3.1 16.8 1.0
CG C:HIS65 3.2 5.5 1.0
CD C:GLU27 3.2 4.9 1.0
OE2 C:GLU27 3.5 12.8 1.0
OE1 C:GLN141 3.6 17.2 1.0
CB C:HIS65 3.6 3.8 1.0
O C:HOH349 3.7 14.6 1.0
NE2 C:HIS65 4.2 13.4 1.0
CD2 C:HIS65 4.3 8.1 1.0
O C:HOH325 4.3 15.3 1.0
CG C:GLU62 4.4 4.3 1.0
CA C:GLU62 4.4 0.0 1.0
CG1 C:VAL110 4.5 4.4 1.0
CD C:GLN141 4.6 7.0 1.0
CG C:GLU27 4.6 3.3 1.0
O C:HOH401 4.7 18.0 1.0
CB C:GLU62 4.7 2.5 1.0
O C:HOH320 4.8 14.7 1.0
CB C:GLU27 5.0 1.2 1.0

Magnesium binding site 6 out of 32 in 9iuy

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Magnesium binding site 6 out of 32 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg204

b:25.9
occ:1.00
 OE1 C:GLU134 2.5 15.4 1.0
OE1 K:GLU134 2.5 15.4 1.0
OE1 M:GLU134 2.5 15.4 1.0
O K:HOH335 2.8 11.9 1.0
O M:HOH335 2.8 14.7 1.0
O C:HOH335 2.8 17.4 1.0
CD C:GLU134 3.5 8.2 1.0
CD K:GLU134 3.5 8.2 1.0
CD M:GLU134 3.5 8.2 1.0
OD1 C:ASP131 3.9 15.3 1.0
OD1 K:ASP131 3.9 15.3 1.0
OD1 M:ASP131 3.9 15.3 1.0
OE2 C:GLU134 4.0 15.8 1.0
OE2 K:GLU134 4.0 15.8 1.0
OE2 M:GLU134 4.0 15.8 1.0
O C:HOH315 4.7 15.3 1.0
O K:HOH315 4.7 10.8 1.0
O M:HOH315 4.7 13.5 1.0
CG C:GLU134 4.8 5.9 1.0
CG K:GLU134 4.8 5.9 1.0
CG M:GLU134 4.8 5.9 1.0
CG K:ASP131 4.8 7.2 1.0
CG M:ASP131 4.8 7.2 1.0
CG C:ASP131 4.8 7.2 1.0
CA C:ASP131 4.9 4.4 1.0
CA K:ASP131 4.9 4.4 1.0
CA M:ASP131 4.9 4.4 1.0
CB C:GLU134 4.9 4.1 1.0
CB K:GLU134 4.9 4.1 1.0
CB M:GLU134 4.9 4.1 1.0
CB C:ASP131 4.9 6.1 1.0
CB K:ASP131 4.9 6.1 1.0
CB M:ASP131 4.9 6.1 1.0

Magnesium binding site 7 out of 32 in 9iuy

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Magnesium binding site 7 out of 32 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg201

b:21.2
occ:1.00
 O D:HOH336 2.1 13.8 1.0
ND1 D:HIS65 2.2 11.1 1.0
O D:HOH304 2.3 18.3 1.0
OE1 D:GLU62 2.3 13.7 1.0
OE1 D:GLU27 2.3 15.1 1.0
CD D:GLU62 3.0 5.5 1.0
CE1 D:HIS65 3.1 7.9 1.0
OE2 D:GLU62 3.1 16.8 1.0
CG D:HIS65 3.2 5.5 1.0
CD D:GLU27 3.2 4.9 1.0
OE2 D:GLU27 3.5 12.8 1.0
OE1 D:GLN141 3.6 17.2 1.0
CB D:HIS65 3.6 3.8 1.0
O D:HOH349 3.7 14.6 1.0
NE2 D:HIS65 4.2 13.4 1.0
CD2 D:HIS65 4.3 8.1 1.0
O D:HOH325 4.3 15.3 1.0
CG D:GLU62 4.4 4.3 1.0
CA D:GLU62 4.4 0.0 1.0
CG1 D:VAL110 4.5 4.4 1.0
CD D:GLN141 4.6 7.0 1.0
CG D:GLU27 4.6 3.3 1.0
O D:HOH401 4.7 18.0 1.0
CB D:GLU62 4.7 2.5 1.0
O D:HOH320 4.8 14.7 1.0
CB D:GLU27 5.0 1.2 1.0

Magnesium binding site 8 out of 32 in 9iuy

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Magnesium binding site 8 out of 32 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg203

b:23.8
occ:1.00
 OE1 D:GLU134 2.5 15.4 1.0
OE1 L:GLU134 2.5 15.4 1.0
OE1 V:GLU134 2.5 15.4 1.0
O L:HOH335 2.8 16.7 1.0
O V:HOH335 2.8 13.1 1.0
O D:HOH335 2.8 14.8 1.0
CD D:GLU134 3.5 8.2 1.0
CD L:GLU134 3.5 8.2 1.0
CD V:GLU134 3.5 8.2 1.0
OD1 D:ASP131 3.9 15.3 1.0
OD1 L:ASP131 3.9 15.3 1.0
OD1 V:ASP131 3.9 15.3 1.0
OE2 V:GLU134 4.0 15.8 1.0
OE2 D:GLU134 4.0 15.8 1.0
OE2 L:GLU134 4.0 15.8 1.0
O L:HOH316 4.7 15.7 1.0
O D:HOH315 4.7 12.9 1.0
O V:HOH314 4.7 12.2 1.0
CG D:GLU134 4.8 5.9 1.0
CG L:GLU134 4.8 5.9 1.0
CG V:GLU134 4.8 5.9 1.0
CG L:ASP131 4.8 7.2 1.0
CG D:ASP131 4.8 7.2 1.0
CG V:ASP131 4.8 7.2 1.0
CA D:ASP131 4.9 4.4 1.0
CA L:ASP131 4.9 4.4 1.0
CA V:ASP131 4.9 4.4 1.0
CB D:GLU134 4.9 4.1 1.0
CB L:GLU134 4.9 4.1 1.0
CB V:GLU134 4.9 4.1 1.0
CB D:ASP131 4.9 6.1 1.0
CB L:ASP131 4.9 6.1 1.0
CB V:ASP131 4.9 6.1 1.0

Magnesium binding site 9 out of 32 in 9iuy

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Magnesium binding site 9 out of 32 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg201

b:21.2
occ:1.00
 O E:HOH336 2.1 13.8 1.0
ND1 E:HIS65 2.2 11.1 1.0
O E:HOH304 2.3 18.3 1.0
OE1 E:GLU62 2.3 13.7 1.0
OE1 E:GLU27 2.3 15.1 1.0
CD E:GLU62 3.0 5.5 1.0
CE1 E:HIS65 3.1 7.9 1.0
OE2 E:GLU62 3.1 16.8 1.0
CG E:HIS65 3.2 5.5 1.0
CD E:GLU27 3.2 4.9 1.0
OE2 E:GLU27 3.5 12.8 1.0
OE1 E:GLN141 3.6 17.2 1.0
CB E:HIS65 3.6 3.8 1.0
O E:HOH349 3.7 14.6 1.0
NE2 E:HIS65 4.2 13.4 1.0
CD2 E:HIS65 4.3 8.1 1.0
O E:HOH325 4.3 15.3 1.0
CG E:GLU62 4.4 4.3 1.0
CA E:GLU62 4.4 0.0 1.0
CG1 E:VAL110 4.5 4.4 1.0
CD E:GLN141 4.6 7.0 1.0
CG E:GLU27 4.6 3.3 1.0
O E:HOH401 4.7 18.0 1.0
CB E:GLU62 4.7 2.5 1.0
O E:HOH320 4.8 14.7 1.0
CB E:GLU27 5.0 1.2 1.0

Magnesium binding site 10 out of 32 in 9iuy

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Magnesium binding site 10 out of 32 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg204

b:26.2
occ:1.00
 OE1 E:GLU134 2.5 15.4 1.0
OE1 G:GLU134 2.5 15.4 1.0
OE1 Q:GLU134 2.5 15.4 1.0
O G:HOH335 2.8 12.4 1.0
O Q:HOH335 2.8 14.1 1.0
O E:HOH335 2.8 17.5 1.0
CD E:GLU134 3.5 8.2 1.0
CD G:GLU134 3.5 8.2 1.0
CD Q:GLU134 3.5 8.2 1.0
OD1 E:ASP131 3.9 15.3 1.0
OD1 G:ASP131 3.9 15.3 1.0
OD1 Q:ASP131 3.9 15.3 1.0
OE2 G:GLU134 4.0 15.8 1.0
OE2 E:GLU134 4.0 15.8 1.0
OE2 Q:GLU134 4.0 15.8 1.0
O E:HOH315 4.7 15.5 1.0
O G:HOH315 4.7 11.3 1.0
O Q:HOH315 4.7 12.8 1.0
CG E:GLU134 4.8 5.9 1.0
CG G:GLU134 4.8 5.9 1.0
CG Q:GLU134 4.8 5.9 1.0
CG Q:ASP131 4.8 7.2 1.0
CG E:ASP131 4.8 7.2 1.0
CG G:ASP131 4.8 7.2 1.0
CA E:ASP131 4.9 4.4 1.0
CA G:ASP131 4.9 4.4 1.0
CA Q:ASP131 4.9 4.4 1.0
CB E:GLU134 4.9 4.1 1.0
CB G:GLU134 4.9 4.1 1.0
CB Q:GLU134 4.9 4.1 1.0
CB E:ASP131 4.9 6.1 1.0
CB G:ASP131 4.9 6.1 1.0
CB Q:ASP131 4.9 6.1 1.0

Reference:

C.H.Wang, K.P.Wu, Y.C.Chang. Cryo-Em Structure of Mouse Heavy-Chain Apoferritin Resolved at 1.51 Angstroms To Be Published.
Page generated: Sat Oct 5 09:37:21 2024

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